Haliangium ochraceum: Hoch_3753
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Entry
Hoch_3753 CDS
T01103
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hoch_3753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoh03019
]
Hoch_3753
03009 Ribosome biogenesis [BR:
hoh03009
]
Hoch_3753
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hoch_3753
Messenger RNA biogenesis [BR:
hoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hoch_3753
Ribosome biogenesis [BR:
hoh03009
]
Prokaryotic type
rRNA helicases
Hoch_3753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACY16253
UniProt:
D0LYA3
LinkDB
All DBs
Position
5158135..5160861
Genome browser
AA seq
908 aa
AA seq
DB search
MSHEISAADTRDAASAPESKPRRSRKRRDAQSRNQEGERSTASDAADTETETDEAEAEAP
LPSFAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPV
VQHIDAASKGAQALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAAG
AQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQT
VLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAE
SPDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATD
VAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYYLKLI
YKIRPEERDLPTNEEMGILDEGARFERVAALVSEEPGADSRALARRIWQSDEGERIFGAL
VQRVLADAPSERSKRSRPKAENTQRSEARRSDERTRSDRSDRSDRSDERSRSDRSDERSR
SDRSDERRGRRDDDERRRSRRDRDDDDRGRSRRSRDDDTRGRGRRDRDDDTRGRGRRDRD
DDTRGRSRRDRDDDDRGRSRRDDDGRRDRDRDERRERAGHKQREDAADKLEATEAEPEVE
AAAETSAPASESGERRNRDERREDRQARREAREARRQERREERHSRRDDDGSPAESEGAA
AEEDTGRSERPRSRGDQRRRNGRGRNAESEGGAKASGDEEPKEFWETWADEKAERQDDTA
ERQDDTAERPRRRRRRSRSEDASDSRASAAPRGEETETETETEIEDSGNLSARLYVNVGK
REGLSAAQVRDLLGEGLDDDTATRIGSVALRNTHCYVRVPEDIANHVIAAAEGKSYEDRE
LVVERARR
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgaaatcagcgctgccgatactcgcgacgccgcgtcggcacccgaatccaag
ccgcgccgctcgcgtaaacggcgcgacgcgcagagccggaaccaagaaggcgagcgctcc
accgcgagcgatgccgccgacacagagaccgaaaccgacgaggccgaagcggaagcgccg
ctgccgagcttcgccgagctcggcctccagcccgagctgctgcaagcgctcgaggagatg
ggttatgaccggccgatgccggtccaggcggcggtgttccagcccctgatgaacggccgc
gacgtgatggtccagtcgcgcaccggctcgggcaagaccgcgggcttcggcatcccggtc
gtccagcacatcgacgccgcgtccaagggcgcccaggctctgatcctggcgccgacccgc
gagctggccctgcaggtctcgcgcgagatcgcacagctcgccaagcccaagggcctgcac
atcgagccgatctacggcggcgcgcccatcaagccgcagatggacgccctggccgcgggc
gcccaggtggtcagcggcaccccgggccgcgtactcgaccacctgcgccgcaagaccctc
gaccccaagaacatccgcatgctcatcctcgacgagtgcgacgagatgctgtcgatgggg
ttccaggaggagatcgagcgcatcatcgagcacctgccggccaaagagaaccgccagacc
gtgctgttctcggcgaccatcccggacgagatccagcgcatcgctcgccggcacatgacc
gacccggaggagatcagcctctccaccggcaacatcagcgtcgacgacatcgaccactcc
tactacgtggtcagcggcgtcgcccgcacccgcgacctgctcaaggtgctgcgcgctgag
tccccggactcggccatcatcttctgcaacacccgcgaggacaccaacaccgtcgccaag
ttcctgcagggacaaggctacgacgccgaggccatctccagcgacctcacccagcgcgat
cgcgagcgcgtcatgaagcgcatgcgcgaccgcaacctcgacttcctggtcgccaccgac
gtcgccgcgcgcggcatcgacatcagcgacctcagccacgtcatcaactacaccttcccc
gactcgcccgaggtctacgtgcaccgcaccggccgcaccggccgtgcgggcaagagcggc
gtggccatttcgctggtcggtccgcgcgagctggggtcgttctattacttgaagttgatc
tacaagatccgcccggaagagcgtgatcttcctacgaatgaggagatgggcatcctcgac
gagggcgcccgcttcgagcgcgtggccgcgctggtgagcgaggagcccggcgccgattcg
cgggccctggctcgacgcatctggcagtcggacgaaggcgagcgcatcttcggtgcgctg
gtgcagcgagtgctcgccgacgctcccagcgagcgcagcaagcgcagccgccccaaggct
gagaatactcagcgcagcgaggcgcgccgctccgacgagcggacccgctccgaccgctcc
gaccgctccgatcgttccgacgagcggtctcgctccgaccgttccgacgagcggtctcgc
tccgaccgttccgacgagcgccgcggccgccgtgacgacgacgagcgccgtcgcagccgc
cgcgaccgcgacgacgatgaccgcggccgcagccgccgcagccgcgatgatgatacccgc
ggccgcggccgtcgcgaccgcgatgatgatacccgcggccgcggccgtcgcgaccgcgat
gatgatacccgcggccgcagccgccgcgaccgcgatgacgacgaccgtggccgcagccgc
cgcgatgacgatggccgccgcgaccgcgaccgcgacgagcgtcgtgagcgcgccggccac
aagcaacgcgaggacgccgccgacaagctcgaggcgaccgaggccgagcccgaggtcgag
gccgctgccgagacgagcgctccggcctccgagagcggtgagcgccgcaaccgcgacgag
cgccgcgaggaccgccaggcccgccgcgaagcccgcgaggcacgccgccaggaacgccgc
gaggagcgccacagccgccgcgacgacgacggcagccccgccgagtccgaaggcgcagcc
gccgaggaggacaccggccgcagcgaacgcccgcgctcgcgcggcgaccagcgccgccgc
aacggccgtggtcgcaacgccgagtccgagggcggcgccaaggcatccggtgacgaggag
cccaaggagttctgggagacctgggccgacgagaaggccgagcggcaggacgacaccgcc
gagcggcaggacgacaccgccgagcgtccgcgccggcgccggcgccgcagtcgctccgag
gacgccagcgacagccgcgcgtccgccgcgccgcgcggcgaggagaccgagaccgagacc
gagacagagatcgaagattcgggtaacctcagcgcccgcctgtacgtcaacgtcggcaag
cgcgagggactgagcgccgctcaggtccgcgacctactcggtgagggactcgacgacgac
accgcgacccgcatcggctcggtggccctgcgcaacacccactgctacgtgcgcgtcccc
gaggacatcgccaaccacgtcatcgccgcggccgagggcaagagctacgaggaccgcgag
ctggtggtcgagcgcgctcgccgctga
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