Haliangium ochraceum: Hoch_3908
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Entry
Hoch_3908 CDS
T01103
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Hoch_3908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_3908
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hoch_3908
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Hoch_3908
RecFOR pathway proteins
Hoch_3908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Mg_chelatase
TIP49
NTPase_1
AAA_3
AAA_33
TsaE
AAA_16
AAA_14
AAA_18
nSTAND3
Bac_DnaA
AAA_17
Sigma54_activ_2
RNA_helicase
NACHT
NB-ARC
Rad17
Motif
Other DBs
NCBI-ProteinID:
ACY16407
UniProt:
D0LZE5
LinkDB
All DBs
Position
complement(5392377..5393507)
Genome browser
AA seq
376 aa
AA seq
DB search
MGRKRHDEGAAGEAGARSGAQRPTRARRETRETRSDSELAPDERGGEGRFQGALRPQRFD
DYVGQPDIIANLRVSVSAAKQNGWALDHFLFAGPPGLGKTTLAHVIANELGVGVHVTSGP
AIDHKGMLASLLTALGEGDVLFIDEIHRLNPVVEENLYPAMEDFKFDLFIGDGPHAKAVT
MNLPRFTLLGATTRMGLLSSPLLDRFGFHWQLGYYDLSEMAAIVARSAQVLGVGMEDGGA
LEIARRSRGTPRIANRLLRRVRDFATVESSGVIGGKLAAAALDRLSVDHAGLDALDRAYL
TVVVERFDGGPVGVDAIAASMSEERGTLEDVVEPFLLQAGFITRTPRGRMATAAAFRHLG
VRAPGRVPTGGPLRSV
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcaagcgacacgacgaaggcgcggccggcgaggccggcgcacgctccggggcc
cagcgcccgacgcgcgcgcggcgcgagacccgggagacccgcagcgacagcgagctggcg
ccggacgagcgcggcggcgagggccgctttcagggcgcgctgcggccgcagcgcttcgac
gattatgtcggacagccggacatcatcgccaacctgcgggtgtcggtgagcgcggccaag
cagaacggctgggcgctcgatcacttcctgttcgccgggccgcccggcctgggcaagacc
acgctggcgcacgtcatcgccaacgagctgggcgtgggcgtgcacgtgaccagcgggccg
gcgatcgaccacaagggcatgctggccagcttgctcaccgccctgggcgagggcgacgtg
ctgttcatcgatgagatccaccgcctcaatcccgtggtcgaggagaacctctacccggcg
atggaggacttcaagttcgacctgttcatcggcgacggcccccacgccaaggccgtgacc
atgaacctgccgcgcttcacgctgctgggcgcgaccacgcgcatgggtctgctgagctcg
ccgctgctcgaccgcttcggcttccactggcagctcggctactacgacctgagcgagatg
gccgcgatcgtggcccgctcggcgcaggtgctcggggtcggcatggaggacggcggcgcg
ctcgagatcgcgcggcgctcgcgcggcacgccgcgcatcgccaaccgcctgctgcgccgg
gtgcgcgacttcgccacggtcgagagctcgggcgtcatcggcggcaagctggcggcggcg
gcgctggatcgcctgagcgtggaccacgccgggctcgatgcgctcgatcgcgcgtatctc
acggtggtggtcgagcgcttcgacggcgggcccgtgggcgtggacgcgatcgcggcgtcg
atgagcgaagagcgcggcacgctcgaggatgtggtcgagccgttcctgctgcaggccggg
ttcatcacccgcacgccgcgcggtcgcatggccacggcggccgcgttccggcatctgggc
gtgcgcgcgcccggtcgcgtgcccaccggcgggccgctgcgctcggtgtag
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