Haliangium ochraceum: Hoch_4647
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Entry
Hoch_4647 CDS
T01103
Name
(GenBank) tRNA pseudouridine synthase D TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
hoh
Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hoh03016
]
Hoch_4647
Enzymes [BR:
hoh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Hoch_4647
Transfer RNA biogenesis [BR:
hoh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Hoch_4647
Prokaryotic type
Hoch_4647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ACY17138
UniProt:
D0LRB0
LinkDB
All DBs
Position
6356838..6357905
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AA seq
355 aa
AA seq
DB search
MGEQASELPFLTGDIPGTGGQLRTCLEDFRVDELPAYEPCGEGDHVMVRIEKRDCTTPDA
VALIADALNVRPIDIGWAGMKDRRAITTQWLSLPPPITPEAARALTLPNVAVLEAERHRN
KLRTGHLRGNRFAVRLRHLDVPASEAASRAVAVLDRLSKPPGSPNWFGSQRFGVHGDNAA
QGRAILRGGRGGPRGRKRRFLLSALQSSMFNQYLALRIHEGLFGRVLEGDVMQKRHSGGI
FHSSDPGEDQGRLESGEIVPTGPMFGHSMRQPPEGTVPATLEQSILAAEELSPESFAHVG
KLAPGTRRPLAVDIGTCAVHSENDDTIELRFSLPSGAYATALLREVVKGSTPFPR
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaacaagcaagcgaactcccgtttctcacgggggatatccccggcaccggaggc
caactccggacctgtctcgaagactttcgggtcgacgagctgcccgcgtacgagccctgc
ggcgaaggcgatcacgtcatggtgcgcatcgagaagcgcgactgcaccacccccgacgcc
gtcgccctgatcgccgacgccctgaacgtccgcccgatcgacatcggctgggccgggatg
aaggatcgccgcgccatcaccacgcagtggctgtcgctgccgccgccgatcacgccggag
gccgcgcgcgcgctcacgctgcccaacgtcgccgtcctcgaggccgagcgccaccgcaac
aagctgcgcaccgggcacctgcgcggcaaccgcttcgccgtgcgcctgcgccacctcgac
gtgcccgccagcgaggccgccagccgcgccgtcgcggtgctcgaccgcctgtccaagccg
cccggcagccccaactggttcggcagtcagcgcttcggcgtccacggcgacaacgccgcc
cagggccgcgccatcttgcggggcggacgcggcgggccgcggggccgcaagcgccgcttc
ctgctgtcggcgctgcagtcgagcatgttcaaccaatacctggcgctgcgcatccacgag
ggtttgttcggacgcgtgctcgagggcgatgtaatgcagaagcgccacagcggcggcatc
tttcactcgagcgatccgggcgaggaccagggccgcctcgagagcggcgagatcgtgccc
accgggccgatgttcggccacagcatgcgccaaccgcccgagggcaccgtcccggccacg
ctcgagcagtcgatcctggccgccgaggagctgagccccgagagcttcgcccacgtcggc
aagctggcgcccggcacccggcgcccgctcgccgtggacataggcacctgcgcggttcac
tctgagaacgacgacaccatcgagctgcgcttctcgctgccctcgggcgcctatgcaacc
gcgttgctgcgcgaagtagtcaaaggttccactccctttccccggtga
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