Haliangium ochraceum: Hoch_4876
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Entry
Hoch_4876 CDS
T01103
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hoch_4876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_4876
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hoch_4876
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hoch_4876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACY17365
UniProt:
D0LU01
LinkDB
All DBs
Position
complement(6732383..6736156)
Genome browser
AA seq
1257 aa
AA seq
DB search
MSMASLDEAIRAVLSETDAPVIAHGLTRASLALVAARLAERADERAGPVVVVAPDESSAR
DLAQDVAFFLPHAQHAAAGTEPLAPPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLA
RGGALLGPVVVLSAPALLRRVMPREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVV
EDAGTFAVRGGVIDVFTPLYRYPARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRE
TVVSEGAEVRRRILDAADAAHHPSAETRRVLERIDSGEEFVGIETLTPAFHTHLAPLASY
LVAGDAPPACWVIVDPDAIGQAAEDEHDVAEDRYRERLDDGRLAFPPSDHYVSPDELRAT
LAEHAYRLEARGLEMYQAAADPLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRF
GVDDNRLLRASLERTRRQAADELMKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSD
YECTAHVIEERSVDVDALSPGAPPVIYPGELSAGFALRTDKLVMLTADEIFGPRRRTSVR
QRAAARRARKALAGGISDFSQLAPGDHVVHAMHGIGLYRGLAKLPVSATGPAVDFLHIEY
RGGQFYLPVYRLGEVSRYVGAEGHAPRLDKLGGVTWQKARKKASAQVKALAEELLKLYAQ
RAAQPGHAYPSSDHMFREFEATFAFEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGK
TEVALRACFKAVAGGKQAALLAPTTVLVEQHYATVCERFAGWPVSVGRLSRFQSRAEQLD
TIKGLAAGTVDLVVGTHRVLSKDVRFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTL
TATPIPRTLHLAMSGLRDLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFF
VCPRIGADPAPSKGKVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQM
SAEALEKVMIDFVSGNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGR
SKQRAFCYLLVPPPEKLSSDARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSG
AIAAVGFEAYAAMLEEAVAELRSGDAGLVRPRDPELNVDVPGYIPDEYIPDTGQRLDLYK
RLSDAEDEDELKILVEEITDRYGELPDEVELLADLMVLKIHARTLRAQSLELTQSRMSLA
LAEDTPLAPQTLASLARKKAFRLTPDMRLVRNFTAEEGERPSASARACLLELIACVT
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggcttcgctcgacgaggcgatccgcgcggttctgtccgagaccgacgcaccc
gtgatcgcgcatggtctcacgcgggccagcctggcgctggtggccgcgcgtctggccgag
cgcgccgacgagcgcgcgggtccggtggtggtggtcgcgcccgacgagagcagcgcccgc
gatctcgcgcaggacgtggcctttttcctgccgcacgcgcagcacgcggccgccggcacc
gagccgctggcgccgccgccggccctgcatctgcccgcgctcgacacctcgccctacgcc
gagctgtcgcccgaccggctggcgctggcgcagcgcatggccgggctggtgcggctggcc
cgcggcggcgcgctgctgggcccggtggtggtgctgtcggcgcccgcgctgctgcgccgg
gtgatgccgcgcgaggcgctgctggcgcgcacggcggtgctcgcgcgcgacgacgagttc
gaccgcgacgccaccgccgagcgattgttgcgcgccggctacacccgggcgcccgtggtc
gaggacgcgggcaccttcgcggtgcgcggcggggtcatcgacgtgttcacgccgctgtat
cgctatccggcgcgcatcgagctgttcggcgacatggtcgagtcgatccggctcttcgat
cccgagagccagcgcacgctgcgcgatctcgaccaggtgtacgtgcacccggtgcgcgag
accgtggtgagcgagggcgccgaggtgcgccgacgcatcctcgacgccgcggacgcagcg
catcacccctcggccgagacccggcgggtgctcgagcgcatcgactcgggcgaggagttt
gtgggtatcgagacgctcacgccggcgttccacacccacctggcgccgctggcctcgtat
ctggtcgccggggacgcgccgcccgcgtgctgggtgatcgtcgatcccgacgcgatcgga
caggcggccgaagatgagcacgacgtggccgaggatcgctaccgcgagcgcctcgacgac
ggccgactggcgtttccgcccagcgaccactacgtctcgcccgacgagctgcgcgcgacc
ctggccgagcacgcctatcgcctggaggcgcgcggcctggagatgtatcaggccgcggcc
gatccgctgctcagcgcgagcgacgagatggcggcggcgcccgaggcgaagtcgaagccg
aaggcgaagtcgaagccgaagccgaaacccgagcaggacggcgcgcagctcatgcgcttt
ggcgtcgacgacaaccgcctgctgcgcgcctcgctcgagcgcacccgccgccaggccgcc
gatgagctgatgaagccgctggtcgaggccatcaccgcgtggcgcggcgacgcgtattgc
atcgcggtcgcggccggcaccatggcgcgcgcgcgccagctcgccggactgctgtccgac
tacgagtgcacggcgcacgtgatcgaagagcgcagcgtcgatgtcgacgcgctgtcgccg
ggggcgccgcccgtgatctacccgggcgagctgagcgccggcttcgcgctgcgcacggac
aagctggtgatgctcacggccgacgagatcttcggcccgcggcggcgcaccagcgtgcgc
cagcgggcggccgcgcgacgcgcgcgcaaggccctggccggcggtatttcggacttctcg
cagctcgcgcccggcgaccacgtggtccacgcgatgcacggcatcggcctgtatcgcggt
ctcgccaagctgccggtgtcggccaccggaccggcggtcgatttcctgcacatcgagtac
cgcggcggccagttctacctgccggtgtatcgcctgggcgaggtgtcgcgctacgtcggc
gccgagggccacgcgccgcggctcgacaagctcggcggcgtgacctggcagaaggcgcgc
aaaaaggcctcggcgcaggtcaaggcgctggccgaggagctgctcaagctgtacgcgcag
cgcgcggcgcagccgggtcacgcctacccgtcctcggatcacatgttccgcgagttcgag
gccaccttcgccttcgaggagacgcccgatcagcagcgcgccatcgacgaggtgctcgcc
gatatggagagcgagcggccgatggaccgcctggtctgcggcgacgtcggctacggcaag
accgaggtggcgctgcgcgcgtgcttcaaggcggtggccgggggcaagcaggcggcgctg
ctggcgccgaccacggtgctggtcgagcagcactacgccacggtgtgcgagcgtttcgcc
ggctggccggtcagcgtgggtcggctgtcgcgctttcagtcccgcgccgagcagctcgat
accatcaaagggctggccgccggcaccgtcgatctggtggtcggcacccaccgcgtgctg
tccaaggacgtgcgcttcaaggatctgggcctgctggtcatcgacgaggagcagcgcttt
ggcgtcacgcacaaggagcggctcaagcgcgtgcgcacccagctcgatgtgctgacgctg
accgcgacgccgattccgcgcaccctgcacctggccatgagcggcctgcgcgatctgtcg
atcatcgccacgccgccggccgaccgccgggcggtgcgcacctttgtcgcccaggtggac
gacggcgtgttgcgcgagggcatccggcgcgagctggggcgcggcggccaggtgttcttc
gtgtgcccgcgcatcggcgccgaccccgcgccgagcaaaggcaaggtcaagggcaaaggc
aagagccagggcgagaccgcgcgccgtgtgcgccgcggcgatatcagcctcgatgagtgg
gccgagcatctgcgcgcgctggtgccagaggcgcgcgtggccgtggcccacggccagatg
agcgcggaggcgctcgagaaggtcatgatcgacttcgtgtccgggaacctcgagattctc
gtgagcacgacgattgtcgagagcggcttggatatcgcgcgcgccaacacgatgtttgtc
gaccgcgcggacagtttcggtctggcccagctctatcagctccgcggccgcatcggccgg
tccaagcagcgcgccttctgctacctgctggtgccgccgcccgagaagctgtcgtccgat
gctcgccgccggctcgagaccctgcagcgcttcagcgagctcggcgccggcttccagatc
gcctcgcacgacctcgagatccgcggcggcggcgagctgctcggcgccaagcagtcgggc
gccatcgccgcggtcggcttcgaggcctacgcggccatgctcgaggaggcggtggccgag
ctgcgcagcggcgacgccggcctggtgcggccgcgcgaccccgagctcaacgtcgatgtg
ccgggctacatccccgacgagtacatccccgacacgggccagcggctcgacctctacaag
cgcctgtccgacgccgaggacgaagacgaactcaagattctggtcgaggagatcaccgac
cgctacggcgagctgccggacgaggtcgagctgctcgcggacctgatggtgctcaagatc
cacgcccgcaccctgcgggctcagagcctggagctcacgcagtcgcggatgtcgctggcg
ctggccgaggacacgccgctggcgccgcagaccctggcgtctctggcgcggaaaaaggcg
ttccggctcacgccggacatgcgtttggtgcgcaacttcactgccgaggagggcgagcgc
ccttcggcgagcgcacgagcctgcttgctggaactcatcgcctgtgttacctga
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