Haliangium ochraceum: Hoch_5141
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Entry
Hoch_5141 CDS
T01103
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
hoh
Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hoh03016
]
Hoch_5141
Enzymes [BR:
hoh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Hoch_5141
Transfer RNA biogenesis [BR:
hoh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Hoch_5141
Prokaryotic type
Hoch_5141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
ACY17629
UniProt:
D0LWH9
LinkDB
All DBs
Position
7081964..7082758
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AA seq
264 aa
AA seq
DB search
MSTERTIRLVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHA
LGQVAHFRTGSSIPPHGFLRGLNGKLPPAIAVVACAEVRADFHARFDSRGKHYRYALHTR
AARAPLLRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSR
PAADLIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHG
LTLVEVFYPAETPSTTTVPPSPQG
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
gtgtccaccgagcgcaccatccggctggtgctcgagtacgacggcaccgggctgtccggc
tggcagcgccagaacaacgcgcccacggtccaggcccacgtcgaagacgcgctctcgtcc
atgctcggacgcgcggtccagatcgtcggcgcctcgcgcaccgacgccggcgtccacgcc
ctcggccaggtcgcccacttccgcaccggcagcagcatcccgccgcacggcttcttgcgc
ggcctcaacggcaagctgccgcccgccatcgcggtggtcgcctgcgccgaggtccgcgcc
gacttccacgcccgcttcgactcgcgcggcaagcactaccgctacgcgctgcacacccgc
gccgcgcgcgcgcccctgctgcgcgagcgcgcctggcactgcccgcgcccgctcgacctc
gcggccatggagcgcgccgcccaggccatgctgggcgagcgcgacttccaggccttccgc
gcctccggctgcacggccaagacctcgcgccgccgcgtcgaccgcgttgcgttgagccgc
ccggcggccgacctcatccatatcgacgtctacggcaacgcctttttgcgcaacatggtc
cgcatcatggccggcacgctggtcgacgtcggcctgggccgtctggccgccgacgagatc
tcatcgatcctcgactccagggaccgcacctgtgcagggcgtacagctccggctcacggc
ctcaccttggtcgaggtgttctatcccgcagagacgccgagtacgaccactgtaccgccc
tccccccaggggtga
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