Haliangium ochraceum: Hoch_5549
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Entry
Hoch_5549 CDS
T01103
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Hoch_5549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_5549
Enzymes [BR:
hoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hoch_5549
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Hoch_5549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
PriA_CRR
Helicase_C
RecA
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
ACY18032
UniProt:
D0LZQ3
LinkDB
All DBs
Position
complement(7615560..7618136)
Genome browser
AA seq
858 aa
AA seq
DB search
MSDSAGSPLLPLSPAAAAADARTDASADAGRYAELAVQAPVRGSFCYEVPERLRGRLVRG
SRVLVPFGGRGLTGVVLSLAEAPPAEVDPARVRAIDGLLADEEPVPVELLELCLWAAAYY
EAPPGEVLRAALPVGAQVSAQQVVELTETGERALAGEGGALSARQRDVLGRLSQAGGSMS
RKALLGRAKDGERGRARALRAADIAPLVEEGLVRYRREADRARVRTRTERTAVLSRPPSD
DERIALIRAPKRAAALSALERAGGAAAVSALREHEPNIASHLRALAGLGLVHFEQRAAEG
SSYAPDDGLSASAAPPALTDAQRAALGAISGGLAGADFAAYLLHGITGSGKTEVYLHAIA
EALDSGRTAIVLVPEISLTPQLAARFRARFGDLVAVLHSGLTDRERFDEWQRLRSGSARI
ALGARSAVFAPVERPAIIVVDEEHDSSFKQEEGVRYNARDVALVRAQRVGGVCVLGSATP
STESYWAAERGRYQLLTLPERPTPRPLPTVERIDLRVYKAESEDMLTAPLRQAIAETLAR
GEQVILFLNRRGFDTFVLCRACGEALRCQQCSVSLTYHRARNMLLCHYCGYQRRVPEQCP
SCRAPGTILRKGLGTEKVADAVAERFAPARVARLDRDVATGARIGEILGRVARREVDILV
GTQMVTKGHDFPGVTLVGVLCADTGLSLPDFRASERTFQLLTQVAGRAGRGERPGRVLIQ
SFRPEAVAIATAAQHDYAAFYRAEREAREEFGYPPFGHFVALRLDGTDALAVERTAELLI
QRVRGSGLDAGITVLGPTEAPLARIKGRTRWHLWLLAEARPPLRRLIHAVLYGDIAGASA
QLPAEVRVSVDVDPVSAL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgattcggccggcagtccgcttctgcccctgtcgcccgccgccgcggccgccgac
gctcgcacagacgccagcgccgacgccgggcgctacgccgagctggcggtgcaggcgccg
gtgcgcggcagcttctgctacgaggtccccgagcggctgcgcggccggctggtgcggggc
tcgcgcgtgctcgtgccctttggcggccgcggcctcaccggcgtggtgctgtcgctcgcc
gaggcgccgccggccgaggtcgaccccgcccgggtgcgcgccatcgacggcctgctcgcc
gacgaggagccggtgccggtcgagctgctcgagctgtgtctgtgggcggccgcgtactac
gaggcgccgcccggcgaggtgctgcgcgcggcgctgccggtgggcgcgcaggtgagcgcc
cagcaggtggtcgagctgacagagaccggcgagcgcgcgctggccggggagggcggggcg
ctgagcgcgcgccagcgcgatgttctcggacgcctgtcccaggccggcggcagcatgtcg
cgcaaggcgctgctgggccgcgccaaggacggcgagcgcggccgcgcgcgggcgctgcgt
gcggccgatatcgccccgctggtcgaagaaggcctggtccgctaccggcgcgaggccgat
cgcgcgcgcgtgcgcacccgcaccgagcgcaccgcggtgctctcgcggccgccgagcgac
gacgagcgcatcgcgctcatccgcgcgcccaaacgcgcggccgcgctgtcggcgctcgag
cgcgcgggcggggccgcggccgtgagcgcgctgcgcgagcacgagcccaacatcgccagc
cacctgcgcgcgctcgccggcctcggcctggtgcacttcgagcagcgcgcggccgagggc
agcagctacgcgcccgatgacggcctctcggccagcgccgcgccgcccgcgctcaccgac
gcgcagcgcgcggccctgggcgcgatctcgggcggcctcgcgggcgcggacttcgccgcc
tacctgctgcacggcatcaccggcagcggcaagaccgaggtctatctgcacgccatcgcc
gaggcgctggacagcggccgcacggccatcgtgctggtgcccgagatctcgctcacgccg
cagctcgccgcccgcttccgcgcgcgcttcggcgacctggtggcggtgctgcacagcggc
ctcaccgaccgcgagcgcttcgacgagtggcagcggctgcgcagcggctcggcgcgcatc
gcgctgggcgcgcgctcggccgtgttcgcgccggtcgagcggccggccatcatcgtcgtc
gacgaggagcacgacagctcgttcaagcaggaggagggcgtgcgctacaacgcgcgcgac
gtcgccctggtgcgcgcgcagcgggtcggtggcgtgtgcgtgctgggctcggccacgccc
tcgaccgagtcgtactgggcggccgagaggggccgctaccagctcctgaccttgcccgag
cggcccacgccgcggccgctgcccacggtcgagcgcatcgatctgcgggtgtacaaggcc
gagtccgaagatatgctgaccgcgccgctgcgccaggccatcgccgagaccctggcgcgc
ggcgagcaggtgatcctgttcctcaaccgccgcggcttcgacaccttcgtgctgtgccgg
gcctgcggcgaggcgctgcgctgccagcagtgctcggtctcgctcacctatcaccgcgcg
cgcaacatgctgctgtgccactactgcggctatcagcgccgcgtccccgagcagtgcccg
agctgccgggcgccggggacgatcctgcgcaaggggttgggcaccgagaaggtcgccgac
gccgtggccgagcgctttgcgccggcgcgggtggcgcggctcgaccgcgacgtggccacg
ggcgcgcgtatcggcgagatcctcggccgggtggcgcggcgcgaggtcgacatcctggtc
ggcacgcagatggtcaccaagggccacgacttccccggcgtcaccctggtcggcgtgctg
tgcgccgacaccgggctgtcgctgcccgattttcgcgcctcggagcggacctttcagctc
ctcacccaggtcgccggacgcgccggtcgcggcgagcgtccgggccgcgtgctgatccag
agcttccgccccgaggccgtggccatcgcgaccgcggcgcagcacgactatgcggccttc
taccgcgccgagcgcgaggctcgcgaggagtttggctatccgccctttggtcacttcgtg
gccctgcgcctcgacggcaccgacgcgctcgcggtcgagcgcacggccgagctgttgatc
cagcgcgtgcgcggctccgggctcgacgccgggatcacggtgctgggcccgaccgaggcg
ccgctggcgcgcatcaagggtcgcacgcgctggcatctgtggctgctggccgaggcccgg
ccgccgctgcggcgcctgatccacgcggtgctgtacggcgacatcgcgggcgcgagcgcg
cagctcccggccgaggtgcgcgtgagcgtggacgtcgatccggtcagcgccttgtag
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