Haliangium ochraceum: Hoch_5639
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Entry
Hoch_5639 CDS
T01103
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
hoh
Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hoh03009
]
Hoch_5639
Enzymes [BR:
hoh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
Hoch_5639
Ribosome biogenesis [BR:
hoh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Hoch_5639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
S4_2
Motif
Other DBs
NCBI-ProteinID:
ACY18116
UniProt:
D0LG91
LinkDB
All DBs
Position
complement(7742398..7744059)
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AA seq
553 aa
AA seq
DB search
MDEAIRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAVY
PEEPFYVLLNKPKGCLTAVTDPENRPTVMEYLHGLPARVVPVGRLDFYSEGVLLLTNDGD
LSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDMLGGTKSRHD
WLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELTQAEVNDLREL
VGLPKDTVARGKWTSRREETERARRSRARARVGMSGGRDGGRDFRTGGRGRDGGYGGRDG
GRDRGYGGRDGGRDRGFGGRDGDYGGRDGGRDGGYGGRDGGRERGFGGRDGGHGGRDGGR
DGGYGGRDGGRERGFGGRDGGRDRGHGGRDGGRDGGYGGRGRDGASGGPRGPGGGRGDGP
RGRSGGPGGGRGDGPRGRSGGPGGGRGDGPRGRSGGPGGGRGDGPRGRSGGPGGGRGDGP
RGRSGGPGGGRGDGPRGRSGGPGGGRGDGPRGRSGGPGGGGPGGKRGGPSRGGPRPSARP
KKGGGPSRGGSSR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagcgatacgtctacagcgctatctatcgcagtgcggggtcgcggcccggcgc
aaggcggaggagctcatcaccagcggcgtggtcagcgtcaacgggcagcgggtcaccgag
ctagggaccaaagtcgtgcccggtcgcgaccgcgtgagcgtccgcggcgaagcggtctat
cccgaggagcccttctacgtgctcctcaacaagcccaagggctgcctgaccgcggtcacc
gaccccgagaaccggcccacggtcatggagtatctgcacggtctgcctgcgcgggtcgtg
ccggtgggccgcctcgacttctacagcgagggcgtgctgctgctgaccaacgacggcgac
ctgtcggcgcggctgcaatcgccccgccaccacgtcgagaagacctaccacgtcaaagtg
cgcgaccaggtcaccgagcgccacctcgaggtgttgcgccagggcgtgcgcctcgaggac
ggcacggtgacgcggccggcgcagatcgacatgctcgggggcaccaagagccgccacgat
tggctggtcatcaccctgaccgagggcaaatcgcggcagattcaccgcatgctcggcgtg
ctcggctacacggtcatgaagctgcagcgcgtggcctttggcgggctgaccttccacggt
ctgcgcgtgggcgacgcgcgcgagttgacgcaagccgaggtcaacgatctgcgcgagctg
gtcggacttcccaaggacacggtggcgcgcggcaagtggacttcgcgtcgtgaagagacc
gaacgcgcccggcgcagccgcgcccgcgcgcgcgttggcatgagcggcggccgggacggg
ggccgtgattttcgtacgggtggacgaggtcgcgacggcggctacggtgggcgcgacggc
ggtcgcgatcgcggctacggcggacgcgacggaggccgtgatcgcggcttcggcggccgc
gacggcgactatggcggacgtgatggcggacgcgacggcggctacggcggacgcgacgga
ggtcgtgagcgcggcttcggtggtcgcgacggcggccatggcggtcgcgatggcggccgt
gacggcggctatggcggacgcgacggaggtcgtgagcgcggcttcggtggtcgcgacggc
ggtcgcgatcgtggccacggcggacgcgatggtggccgtgacggcggctatggcggtcgg
ggtcgcgacggcgcctcgggcggcccgcgcggtcccggaggtggacgcggggacggcccg
cgcggtcgcagcggcggccccggaggcggacgcggcgacggcccgcgcggtcgcagcggc
ggccccggaggcggacgcggcgacggcccgcgcggtcgcagcggcggccccggaggtgga
cgcggcgacggcccgcgcggtcgcagcggcggccccggaggcggacgcggcgacggcccg
cgcggtcgcagcggcggccccggaggtggacgcggcgacggcccgcgcggtcgcagcggc
ggccccggaggcggacgcggcgacggcccgcgcggtcgcagcggcggccccggaggcggt
ggtcccggcggtaagcgcggcggaccgtctcgcggtggtccgcgtccgtccgctcgtccg
aaaaaaggcggcggtccctctcgcggcggctcgtcgcgctga
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