Haliangium ochraceum: Hoch_5748
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Entry
Hoch_5748 CDS
T01103
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Hoch_5748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_5748
Enzymes [BR:
hoh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Hoch_5748
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Hoch_5748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
AAA_28
HHH_2
nSTAND3
AAA_16
AAA_22
IstB_IS21
AAA_5
MeaB
AAA
NTPase_1
Helicase_RecD
AAA_29
TraI_hel_assoc_N
PIF1
SLFN-g3_helicase
Mg_chelatase
RuvB_N
AAA_33
TsaE
NACHT
AAA_18
ABC_tran
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ACY18225
UniProt:
D0LH80
LinkDB
All DBs
Position
7881249..7883555
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AA seq
768 aa
AA seq
DB search
MAGSPGNGPRTERHRQRRTPVADDPAQTGSVVEGTLTRIVYENADTHWTVARVRVGDDEA
GTTRDPAARAEGEITVVGSMVGVAPGTPLRLRGTWEQHNSYGRQFRVHSYQARMPETIAG
LERYLGSGEFRGIGPELAKRIVEHFGLEALSVIEKAPKRLQEVDGIGAARAEKIAEAWTA
QRDVHDVMVFLRGYGVTASQAARIHKRYGNRAEAIVRENPYRLALDIWGIGFKTADSIAQ
NLGMARDAPERLEAGLIHVLGKLAEDGHVHVPEPNLLDTAAGILEVDAMLLPEALDRLET
SQLVVCEALGDRGTCVSLTFLWQHESDAAARYAALVETPMRPRKLDLDQALAAFEAEAEL
ALTAEQRRAALAAVMDKSVVLTGGPGVGKTTIVRAIVFLFERLGRSVTLAAPTGRAAKRL
AESTARDAATIHRLLEFQPAGGGFFRSADNPLDSDVVIIDETSMVDIALLAALLDAMPAS
AQLVLVGDIDQLPSVGPGAVLADLIASRAATVVRLTEIFRQARESRIVMAAHEINSGMVP
QLAPPQGTSAHRSDFYFISREQPVRARETIVDLVAERIPEAFGFDPLADIQVLCPVHRGE
LGTIALNRALQERLTPAVDEQHQVTRGERSYRVGDKVMQLENDYDRGVFNGDIGVIFEIA
GERKKVLVDYMDGRVVGYEARDLDQLTHAYAISVHKSQGSEYPVVVLPLATQHYIMLQRN
LLYTAVTRGKSLVVIVGSAKAVRRAVENQTNTARWTWLAERIREQLGE
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagccccggcaacggcccgcggacagagcgccacaggcagcgacgcacacct
gtggccgatgatcccgcccagacaggttcagtcgtcgagggcaccctgacgcgtatcgtc
tacgagaacgcggacacccactggaccgtggcgcgggtgcgggtcggcgacgacgaggcc
ggcacgacgcgcgatccggccgcgcgcgccgagggcgagatcaccgtggtgggctcgatg
gtcggcgtggccccgggcacgccgctgcgcctgcgcggcacctgggagcagcacaacagc
tacggccggcagtttcgcgtgcacagctaccaggcgcgcatgcccgagaccatcgccggg
ctcgagcgctacctcggctccggcgagtttcgcggcatcggccccgagctggccaagcgc
atcgtcgagcacttcggcctggaggcgctgagcgtcatcgagaaggcgcccaagcggctg
caggaagtcgacggcatcggcgccgcgcgggccgagaagatcgccgaggcgtggaccgcg
cagcgcgacgtccacgacgtcatggtgttcttgcgcggctacggcgtcaccgcgtcgcag
gccgcgcgcatccacaagcgctacggcaatcgcgccgaagccatcgtgcgcgagaacccc
tatcgcctcgcgctcgacatctggggcatcggcttcaagaccgccgacagcatcgcccag
aacctgggcatggcgcgcgacgcgcccgagcggctcgaggccggcctgattcacgttctc
ggcaagctggccgaagacggccacgtgcacgtgcccgagcccaacctgctcgacaccgcg
gccggaatcctcgaggtcgacgccatgctcttgcccgaggcgctcgaccggctcgagacc
tcgcagctcgtggtctgcgaggccctgggcgaccgcggcacctgcgtctcgctcaccttc
ctgtggcagcacgagagcgacgccgccgcgcgctacgccgccctggtcgagaccccgatg
cggccgcgcaagctcgatctcgaccaagccctggccgcgttcgaggccgaggccgagctc
gcgctcacggccgagcagcggcgcgccgccctggccgcggtgatggacaagagcgtggtg
ctcaccggcggccccggcgtcggcaagaccaccatcgtgcgcgcgatcgtgttcctgttc
gagcgcttggggcgcagcgtgaccctggccgcgccgaccgggcgcgcggccaagcgcctg
gccgagagcaccgcgcgcgacgccgccaccattcatcgcttgctcgagtttcagcccgcg
ggcggcggcttctttcgcagcgcggacaatcccctcgacagcgatgtggtcattatcgat
gagacctcgatggtcgatatcgccctgctcgccgccctgctcgacgccatgcccgcgagc
gcacagctcgtgctggtcggcgatatcgaccagctcccgtccgtgggcccgggcgccgta
ctcgccgacctcatcgcctcgcgcgcggccaccgtcgtgcgcctcaccgagatctttcgg
caggcgcgcgagagccgcatcgtcatggccgcgcacgagatcaacagcggcatggtgccg
cagctcgcgccgccgcagggcaccagcgcgcatcgctcggatttctacttcatctcgcgc
gagcagcccgtgcgcgcgcgcgagaccatcgtcgatctggtcgccgagcgcatccccgag
gcctttggattcgacccgctggccgatatccaggtgctgtgtccggtgcatcgcggcgag
ctgggtacgatcgcgctcaaccgcgccttgcaggagcggctcacgcccgcggtcgatgag
caacatcaggtgacgcggggcgagcgcagctatcgcgtgggcgataaagtcatgcagctc
gagaatgactacgaccgcggcgtgttcaacggcgatatcggcgtgatcttcgagatcgcg
ggtgagcgcaagaaagtcctcgtcgattacatggacggacgcgtggtcggatacgaggcc
cgcgacctcgaccagctcactcacgcgtacgcgatcagcgtgcacaagagccagggctcg
gagtatccggtcgtggtgctgccgctggccacgcagcactacatcatgttgcagcgcaat
ctgctgtacactgccgtaacccgcggcaaatcgctggtcgttatcgtcggctcggcgaaa
gccgtgcgccgggcggtcgagaatcagaccaataccgcgcgctggacctggctcgccgaa
cgcatccgcgaacagctcggcgaatga
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