KEGG   Haliangium ochraceum: Hoch_6550
Entry
Hoch_6550         CDS       T01103                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
hoh  Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:hoh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hoh03400]
    Hoch_6550
Enzymes [BR:hoh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hoch_6550
    5.6.2.6  RNA 3'-5' helicase
     Hoch_6550
DNA repair and recombination proteins [BR:hoh03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Hoch_6550
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr ResIII HTH_9 Cas3-like_C_2
Other DBs
NCBI-ProteinID: ACY19018
UniProt: D0LRM6
LinkDB
Position
8988361..8993082
AA seq 1573 aa
MPSIEQPPTPPADAAARDPIDAAGAAALAGFHPVVASWFRARFGSPTAPQTQGWPRIAAG
EDTLIAAPTGSGKTLAAFLACLDRLIQRSLRSVLPERTHILYISPLKALSNDIFRNLETP
LAELGEAFAEAGLCLPPIRTAVRTGDTPQSERAKMAKRPPHILITTPESFYLLLTSKSGR
AALSAVETVIVDEIHAVARDKRGAHLGLSLERLDRLVRSESGRAPVRVGLSATQRPIELI
AEYLSGRARPLPHIVDAGHARTLDIAIEITDDELGALASHEQMGRVYDRIVELIEQHHTT
LVFVNTRRLVERVAHALEERLGEERVVAHHGSMSREMRLAAEQKLKFGQVACAVATASLE
LGIDVGPVDLVVQLGSPRSIATMLQRIGRSGHSRRGLPKGRLFALTRDQLVECAALVRAV
CKHNLDAIEPRMSPFDILAQQIVAAAACEDLEQDELFALVSGAFHYRELAREDFDKILLM
LSEGVSDRRGRATAHIHWDRIGGRIKARRGARLAALTSGGAIPDNANYQVVLYPEELRIG
EVDEDFAIESSPGDVFLLGNAPWRIRRVETGRVLVEDARGAPPTVPHWVGEAPGRTIELS
EEVGTLRDEVEARIAAGEAPADIAAWVGEVACMPRTAAEQLVAYLREARGALGTLPTTRR
LIAERFFDEGGGMQLVIHAPLGGRINRAWGLALRKRFCRSFDFELQAAATDDGIVISLGQ
PHSFPLETVFQFLSSVSVEEILVQALLDAPMFEIRWRWNATRSLTVLRRYGAKKVAPHIL
RMRANDLLSVVFPQQQACLENIPGDREIPDHPLVAETVRDCLTEAMDIERLRQLIADIEN
GRIEVLGRDTVSPSPLCHELIMANPYAFLDDADAENRRTRAVSLRRSLPDQGDATALDES
AIRRAEEEARPSVRDLDELHDALLSLVLVPEPLGLSLAGSSALSAPLMDRLISDGRATRL
RYDSRGRECVAWVAAERLPVARAAVPEAEELPALPPLPFAVEVPAPEEVDVRIVRAHLDY
SGPRSGRRLADELGLPGARVLAACYALENDGAILRGSFTPGLSGKPEDDLDIEWCNRRIL
ARIHRLTLARLRSEIEPVSAAALMRFLFRWQRVNHENRLIGEDGLLTVLEQLQGFETAAG
AWERELLPARLHGYQPAWLDALCLSGQVAWCRLSPRMPSHPDPASEIDADDTSDSDSAAA
HAGAANENAGAGAGANGKRRGRLAPTKAAPLALLLRRDLDWLRAPSARSDSVFDRVDADR
VESADDIAQALAEGGFGDAARAVYAHLASAGASFLAELVRGTGLAPEQVEDGLWQLAQAG
LATADGFAGLRVLVDRAAGESRSLFDEVGRRSQDRKTGPRGAGSSAWQRAVRKARQRERQ
RPAHAVRSLPTAAGRWSLLGPPDPAQVDPEAVALQLLQRYGVIFRDLLVRESNLPPWREV
LICLRRLEARGEVRGGRFVSGFVGEQFALPEAVDGLRSMRRAPAIDEFTLITATDPLNLV
GITSAGPKTPAVMGNAILFRNGVPLASREAGEIVLRQDLEPGAQIDDDMVYHPPPRKPAR
EPQPVQQMGLPLL
NT seq 4722 nt   +upstreamnt  +downstreamnt
gtgcccagcatcgagcaaccgcccacgccgcccgccgatgccgccgcgcgcgacccgatc
gacgccgctggcgcggccgcgctggccggcttccaccccgtggtggcgtcgtggttccgc
gcccgcttcggctcgcccacggcgccgcagacccagggctggccgcgcatcgcggccggc
gaagacaccctgatcgcggccccgaccggctccggcaagaccctggccgcgttcctcgcc
tgcctcgatcgcctcatccagcgcagcctgcgcagcgtgctgcccgagcgcacgcacatc
ctctacatctcgccgctcaaggcgctgtccaacgacatcttccgcaacctcgagaccccg
ctggccgagctcggcgaagcctttgccgaagccggcctgtgcctgccgccgatccgcacc
gcggtccgcaccggcgacaccccgcagtccgagcgcgccaagatggccaagcggccgccg
cacatcctcatcaccacgcccgagtcgttctacctgctgctcacctccaagagcggacgc
gccgccctgtccgccgtggaaaccgtcatcgtggacgaaatccacgccgtggcccgcgac
aagcgcggcgcccacctcggcctctcgctcgagcgcctcgaccgtctggtgcgcagcgag
agcggccgcgcgcccgtgcgcgtgggcctgtcggccacccagcggcccatcgagctgatc
gccgagtacctcagcggccgcgcgcgcccgctgccgcacatcgtcgacgccggccacgcc
cgcaccctcgacatcgccatcgagatcaccgacgacgagctcggcgccctggccagtcac
gagcaaatgggacgcgtgtacgatcgcatcgtcgagctgatcgagcagcaccacaccacc
ctggtcttcgtcaacacccggcgcctggtcgagcgcgtcgcccacgccctggaagagcgc
ctgggcgaggaacgcgtggtcgcccaccacggctcgatgtcgcgcgagatgcgcctggcg
gccgagcagaagctcaaattcggacaggtggcctgcgccgtggccaccgcctcgctcgag
ctcggcatcgacgtcggcccggtcgacctcgtggtccagctcggctcgccgcgctccatc
gccaccatgctgcagcgcatcggccgctccggccactcgcgccgcggcctgcccaaaggc
cgcctgttcgcgctcacccgcgaccagctcgtcgagtgcgcggccctggtgcgcgccgtg
tgcaagcacaacctcgacgccatcgagccgcgcatgtcgcccttcgacatcctcgcccag
cagatcgtggccgcggccgcgtgcgaggacctcgagcaagacgagctgttcgcgctggtg
agcggcgcctttcactaccgcgagctggcgcgcgaggacttcgacaagatcctgctcatg
ctgtccgagggcgtgtccgaccgccgcggccgcgccaccgcgcacatccactgggaccgc
atcggcgggcgcatcaaagcccgccgcggcgcccgcctcgccgccttgacctcgggcggc
gccatccccgacaacgccaactaccaggtcgtcctgtaccccgaagagctgcgcatcggc
gaagtcgacgaggacttcgccatcgagagctcgcccggagacgtgttcctgctcggcaac
gcgccgtggcgcatccggcgcgtcgagaccggccgcgtgctggtcgaagacgcgcgcggc
gccccgcccacggtgccgcactgggtcggcgaggcgcccggacgcaccatcgagctcagc
gaggaggtcggcaccctgcgcgacgaagtcgaggcccgcatcgcggccggcgaagccccc
gccgacatcgccgcctgggtcggcgaggtggcctgcatgccgcgcacggccgccgagcag
ctcgtcgcctacctgcgcgaggcccgcggcgccctcggcaccctgccgaccacgcgccgg
ctcatcgccgagcgcttcttcgacgagggcggcggcatgcagctcgtcatccacgccccg
ctcggcggccgcatcaaccgcgcctggggcctggcgctgcgcaagcgcttctgccgcagc
ttcgacttcgaattgcaggccgcggccaccgacgacggcatcgtcatctcgctcggccag
ccgcacagcttcccgctcgagaccgtgtttcagtttttgtcctcggtctcggtcgaggag
atcctggtgcaggcgctgctcgacgcgcccatgttcgagatccgctggcgctggaacgcc
acccgctcgctcaccgtgctgcgccgctacggcgccaagaaggtcgcgccccacatcctg
cgcatgcgcgccaacgacctgctcagcgtggtgtttccgcagcagcaggcgtgcctcgag
aacatcccgggcgaccgcgagatcccggaccatcccctggtcgccgagaccgtgcgcgac
tgcctcaccgaggccatggacatcgagcgcctgcgccagctcatcgccgacatcgagaat
ggccgcatcgaagtcctcggccgcgacacggtctcgccctcgccgctgtgccacgagctg
atcatggccaacccgtacgcgtttctcgacgacgccgacgccgagaaccgccgcacccgg
gccgtgagcctgcgccgcagcctgcccgaccagggcgacgccaccgcgctcgacgagagc
gccatccgccgcgccgaagaggaggcccggccgagcgtgcgcgacctcgacgagctgcac
gacgcgctgctgtcgctggtgctggtgcccgagcccctgggcctgtcgctggccggcagc
tcggcgctgagcgcgccgctcatggaccggctgatttcggacggtcgggcgaccaggctg
cgctatgacagccgcggtcgcgaatgcgtcgcctgggtcgcggccgagcgcctgcccgtg
gcccgcgccgccgtgcccgaggccgaggagctgccggcgctgccgcccttgcccttcgcc
gtcgaggtgcccgcgcccgaggaggtcgacgtccgcatcgtgcgcgcccacctcgactac
agcggcccgcgcagcggccgccgcctggccgacgagctgggtctgcccggcgcgcgcgtg
ctcgccgcctgctacgcgctggagaacgacggcgccatcctgcgcggctcgttcacgccc
ggcctgagcggcaaacccgaggacgatctcgacatcgagtggtgcaaccggcgcatcctg
gcccgcatccaccgcctcaccctggcgcggctgcgcagcgagatcgagccggtctcggcc
gccgccctgatgcgctttctgttccgctggcagcgcgtcaaccacgagaaccgcctgatc
ggcgaggacggcctgctcaccgtgctcgaacagctccagggcttcgagaccgcggccggc
gcctgggagcgcgagcttctgcccgcgcgcctgcacggctaccagccggcctggctcgac
gccctgtgcctctcgggccaggtcgcctggtgccgcctgagcccgcgcatgccctcgcat
cccgaccccgcgtccgaaatcgacgcggacgataccagcgacagcgacagcgcagccgct
cacgccggcgccgccaacgagaacgccggggctggcgcaggcgcaaacggcaagcgccgc
ggccgtctagcgccgaccaaagcggcgcctctggccctgctgctgcgccgcgatctcgac
tggctgcgcgcgccctcggcgcgttcggacagcgtcttcgaccgcgtggacgcagaccgc
gtcgagagcgcggacgacatcgcccaggccctggccgagggtggctttggcgacgccgcg
cgcgcggtctacgcccacctggccagcgccggcgcgtcgttcttggccgagcttgtgcgc
ggcaccgggctcgcgcccgagcaggtcgaggatggcctgtggcagctcgcccaggccggc
ctggccacggccgacggcttcgccggcctgcgcgtgctggtcgaccgcgccgccggcgag
agccgcagcctgttcgacgaggtcggccgccgctcccaggaccgcaagaccggcccgcgc
ggcgccggctcctcggcctggcagcgcgcggtgcgcaaagcccgccagcgcgagcgtcag
cgcccggcccacgccgtgcgcagcctgcccacggcggccggtcgctggtcgctgctgggc
ccgcccgaccccgcgcaggtcgatcccgaggccgtggccctgcagctattgcagcgctac
ggcgtgatcttccgcgacctgctggtgcgcgagtccaacctgccgccgtggcgcgaggtc
ctgatctgcctgcgccgcctcgaggcccgcggcgaggtccgcggcggccgcttcgtgagc
ggcttcgtcggcgagcagttcgccctgcccgaggccgtcgacggcctgcgcagcatgcgc
cgcgcgcccgccatcgacgagttcacgctcatcaccgccaccgatccgctcaacctcgtc
ggcatcacctcggctgggcccaagaccccggcggtcatgggcaacgccatcctgttccgc
aacggcgtgcccctggcctcgcgcgaggccggcgagatcgtgctgcgccaggacctcgag
cccggcgcccagatcgacgacgacatggtctatcacccgccgccgcgcaagcccgcgcgc
gagccccagcccgtgcagcagatgggccttccgctgctgtag

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