Haliangium ochraceum: Hoch_6686
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Entry
Hoch_6686 CDS
T01103
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hoh
Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hoh03016
]
Hoch_6686
Enzymes [BR:
hoh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Hoch_6686
Transfer RNA biogenesis [BR:
hoh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Hoch_6686
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ACY19151
UniProt:
D0LT15
LinkDB
All DBs
Position
9164718..9165920
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AA seq
400 aa
AA seq
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MSESASHPTPLTDAASVAAVAARVAAAGAMAFDFEFASDGRFLAELALVQVSWGDPEAPE
IALIDSVAVDPTPVLRLIGDPAVVSVAHAAKQDLGILAARFDIFAENFWDTQIAAAFVGM
AEQIGYGKLVDALLGVQLDKASQFTKWLERPLSPAQLRYAADDVRYLPRVWAHLSQRLDE
LGRRAWVGEESALLARDAMPYGPAELAYHSLKGAGALRGKALGRLAALAAWRQERALADN
LPLSWVLPDKALLELSRRGARGPGDVRNAPGVTGTIARRYADAIVSALQGAGKPPAGAPP
SRGPSLDDGARLRVPVVMAMLQTRAAEAGIAARFAATRADAESLVAWHAAGGDEGERDGV
PLLEGWRRDLFGDAALAWLRGERALRCDPGSGALRLDGES
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atttccgaatcagcctcgcacccgactccgcttaccgacgccgcctcagtcgccgccgtc
gccgcgcgcgtggcggccgccggcgccatggccttcgacttcgagttcgcgtccgacggc
cgcttcctggccgagctggcgctggtccaggtgtcctggggcgaccccgaggcgcccgag
atcgccctcatcgatagcgtcgcggtcgatcccacgccggtgctgcgcctgatcggcgac
ccggccgtggtctcggtggcgcacgcggccaagcaggatctcggcatcctggccgcgcgc
ttcgacatcttcgccgagaatttctgggacacgcagatcgcggccgccttcgtcggcatg
gccgagcagatcggctacggcaagctggtcgacgcgctgctcggggtgcagctcgacaag
gccagccagttcaccaagtggctcgagcgtccgctgagcccggcgcaactgcgctacgcg
gccgatgacgtgcgctacctgccgcgggtctgggcgcatctgagccagcgcctggacgag
ctcggccggcgcgcgtgggtgggcgaggagtcggcgctgctggcccgcgacgccatgccc
tacgggcccgccgagctagcgtatcactcgctcaagggcgcgggcgcgctgcgcggcaag
gcgctgggtcggctggcggcgctggcggcctggcgccaggagcgcgcgctggccgacaac
ctgccgctgtcgtgggtgctgccggacaaggcgctgctcgagctgagccgccggggcgcg
cgcgggcccggcgacgtgcgcaacgcgcccggggtcacgggcaccatcgcccggcgctac
gcggacgccattgtcagcgcgctgcagggtgccggcaagccgcccgcgggtgcgccgccg
agccgcgggccgagcctcgacgacggcgcccggctgcgcgtgcccgtggtcatggccatg
ctccagacgcgcgcggccgaggccggtatcgccgcgcgcttcgcggccacgcgcgccgac
gccgagtcgctggtggcgtggcacgcggccggcggcgacgagggcgagcgcgacggcgtg
ccgctgctcgagggctggcgccgcgacctgttcggcgacgccgccctggcctggctgcgc
ggcgagcgcgcgctgcgctgcgatcccgggtcgggcgcgctgcgcctcgacggcgagagc
tga
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