Haliangium ochraceum: Hoch_6813
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Entry
Hoch_6813 CDS
T01103
Name
(GenBank) metal dependent phosphohydrolase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hoch_6813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoh03019
]
Hoch_6813
Enzymes [BR:
hoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Hoch_6813
Messenger RNA biogenesis [BR:
hoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Hoch_6813
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PolyA_pol_RNAbd
Cas3_HD
tRNA_NucTran2_2
TetR_C_11
Motif
Other DBs
NCBI-ProteinID:
ACY19277
UniProt:
D0LUF4
LinkDB
All DBs
Position
9341402..9342394
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AA seq
330 aa
AA seq
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MEALSQLLDTPDNADVAARVRAQIQDDPVAVLRIATAIAENRGQWPADCVTRACREEVAL
LEQAPGEDVVEEFGLMLLGRDVDHALQWLQRVGVIALLMPELEATVDLVQEGGRRHKDVW
EHTKTVVKQAVRRPVVRWAALLHDIGKVPTRTFTRNGVHFHGHAEVGARMFDKMCRRLPF
ERSMRKKIRFLIKHHLRSAQYEIGWTESAVRRFHREMEAHLEDLLALSRADITSKRPGRR
RALLHQISELQARIDAVVEKDAQVPPLPSGLGNAIMEHFGLPPSKRIGDIKKVLEAAVAR
GELEERRDDDYYLAWIADNDLLAQVPESGR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgctgagccagctcctcgacaccccggacaacgccgacgtggccgcgcgagtc
cgtgcccagatccaggacgacccggtcgccgtgctgcgcatcgccaccgccatcgccgag
aatcgcggccagtggccggctgattgcgtgacccgggcgtgccgcgaagaggtcgccctg
ctcgaacaggcgccgggcgaagacgtggtcgaagagttcggcctgatgctgctcggccgc
gacgtcgaccacgcgctgcagtggctgcaacgcgtcggcgtcatcgccctgctgatgccc
gagctcgaggccaccgtggacctcgtccaggagggcggacgtcggcacaaggacgtctgg
gagcacaccaagaccgtggtcaagcaggccgtgcgccgcccggtcgtgcgctgggccgcg
ctgctgcacgacatcggcaaggtgccgacgcggaccttcacgcgcaacggcgtgcacttc
cacggccacgccgaggtcggcgcgcgcatgttcgacaagatgtgtcggcggctgcccttc
gagcgcagcatgcgcaagaagatccgcttcctgatcaagcatcacctgcgctcggcgcag
tacgagatcggctggaccgagagcgccgtgcgccgcttccaccgcgagatggaagcgcac
ctcgaggatctgctcgcgctctcgcgcgccgatatcacgtccaagcgcccgggtcgccgg
cgcgcgctgctgcaccagatcagcgagctgcaggcgcgcatcgacgccgtggtcgaaaag
gacgcccaggtgccgccgctgccgagcgggctgggcaacgcgatcatggagcacttcggc
ctgccgccctcgaagcgcatcggcgacatcaagaaggtgctcgaggcggccgtggcccgc
ggcgagctcgaagagcgccgcgacgacgactactacctggcctggatcgcggataacgac
ctgctcgcccaggtcccggaatccggccgctag
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