Haliangium ochraceum: Hoch_6885
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Entry
Hoch_6885 CDS
T01103
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hoh
Haliangium ochraceum
Pathway
hoh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hoch_6885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoh03400
]
Hoch_6885
Enzymes [BR:
hoh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Hoch_6885
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Hoch_6885
DNA repair and recombination proteins [BR:
hoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hoch_6885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
IBR
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ACY19348
UniProt:
D0LVN0
LinkDB
All DBs
Position
complement(9427623..9428471)
Genome browser
AA seq
282 aa
AA seq
DB search
MPELPEVETVRRTLAPVLGQRVEAMWTSGLPLRLNRPVPEELLREISLGRTVEDIRRWGK
YLLLDLAGAGHSVLVHLGMSGRLRMMAAAGERPPHTHVAWLLSGGAPPAELRYSDPRRFG
VIDVVERGNERAHPSLARLGEDPLTGALTGALLHAGSRRVRRSIKTFLLDQHTVAGVGNI
YASEALWQARILPTMPAERLSKARADALAAAIHEVFARALEHGGTSLRDFVNADGHAGEH
AHYLWVYERDGEPCPRPTCPGIIRRTVLQARSTFHCPRCQRR
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccctgaagtcgagaccgtgcgccgcaccctggcgccggtgttgggacag
cgggtcgaagcgatgtggaccagcggtctgccgctgcgtctcaaccggccggtgcccgag
gagctgctgcgcgagatctcgctcggacgcacggtcgaggatattcggcgctggggcaag
tacctgctcctcgacctcgccggcgcgggtcattcggttctcgtacacctgggcatgagc
ggtcggctgcgcatgatggcggctgcgggcgagcggccgccgcacacgcacgtggcctgg
ttgctgagcggcggcgcgccgccggccgagctgcgctattcggatccgcgtcgcttcggc
gtgatcgacgtggtcgagcgcggcaacgagcgcgcgcatccctcgctggcgcggctgggc
gaagatccgctgaccggcgcgctgaccggcgcgctgctgcacgcgggttcgcgccgggtg
cggcgcagcatcaagaccttcttgctcgaccaacacacggtcgccggcgtgggcaatatc
tatgcatccgaggccctgtggcaggcgcgcattctgccgaccatgccggccgagcggctg
agcaaggcgcgcgccgatgcgctggccgcggcgattcacgaggtgttcgcgcgcgcgctc
gagcacggcggcaccagcttgcgcgatttcgtcaacgcggacggacacgcgggcgagcac
gcgcactatctgtgggtgtacgagcgcgacggcgagccgtgtccgcgtcccacgtgcccg
ggcatcatccgtcgcacggtgttgcaagcgcgctcgaccttccactgtccgcgctgtcag
cgccgctga
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