Vreelandella olivaria: HORIV_18880
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Entry
HORIV_18880 CDS
T06227
Symbol
rnb
Name
(GenBank) exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hol
Vreelandella olivaria
Brite
KEGG Orthology (KO) [BR:
hol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hol03016
]
HORIV_18880 (rnb)
Enzymes [BR:
hol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HORIV_18880 (rnb)
Transfer RNA biogenesis [BR:
hol03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HORIV_18880 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
DUF1822
Motif
Other DBs
NCBI-ProteinID:
BBI49467
LinkDB
All DBs
Position
complement(1346616..1348397)
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AA seq
593 aa
AA seq
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MLQNNAMLAQLKQQIRQTTPRAEGVIKATDKGFGFLETDDGESYFVPPPAMKQVIHGDRV
EGVIHENGDKKSIEPEKLIEAGLDRFVSRVQKREGRLSVVPDHPSIKNVIKARIKNSLDE
ESIADGDWVVARLVRHPLKADDRAFFAQIDELVAKSDDPAVPWRVTLARHALEQECPDAG
TDWPLMDEGLTREDLTATPFFTIDGEKTRDMDDALHVAARAEGGWRLSVAIADPTAYVAE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGKERPALACTLDINADGSLGDY
RFFAANVKSHAKLVYDNVSDWIEGQGDWAPADEIAEQLTALRDLTEARTAWRNEHALVFK
DRPDYVFDLDPAGNVLAVRTEERRIANRMIEESMIVANACCADFLAQHIGHGIFNVHRAF
EPEKAEAAQEFLAGQEIVVEREALTELARYTELKRALESRDDAWLDARLRRFQGFTMMSA
QPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPSAQNQDTFEAEIMAINRGGMRVRLLENGATAFVPP
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagaacaacgccatgcttgcccagctcaagcaacagattcgtcaaaccaccccc
cgcgctgaaggggtgatcaaagccaccgacaaaggtttcggttttctcgaaaccgacgac
ggtgaatcctatttcgtgccgccgcccgccatgaagcaggtgattcacggtgatcgcgtg
gaaggcgtgattcacgagaacggtgacaaaaaatccattgagccggaaaagctgattgaa
gctgggctggatcggtttgtttcccgcgtgcagaaacgtgagggccgcctgtccgtcgtg
cccgaccatccgtcgattaaaaatgttatcaaggcacggattaagaacagccttgatgaa
gagagcattgctgacggtgattgggtcgttgcgcgtttggtgcgccacccgctgaaagcc
gacgatcgcgctttctttgcccagattgatgaattggttgcgaaaagcgatgacccggca
gtgccgtggcgcgttacgctggctcgccatgcgctggagcaagagtgccccgatgcaggc
accgactggccgctgatggatgaaggcctgactcgcgaagacctgaccgccacgcccttc
ttcaccattgatggtgaaaagacccgcgatatggatgatgcgctgcatgtcgctgctcgt
gcggaaggcggctggcggttgagcgtggccattgccgaccccaccgcttatgtggcagaa
ggccatgcggcggacttggaagcccgcacccgcgcctttaccgtttacctgcctggccaa
aacgtcaccatgctgcccgagcagctagcggatgatctctgctcattgtgggaaggcaag
gagcgccctgcactagcctgtacgctggatattaatgccgacggcagcctgggtgattac
cgcttttttgcggccaacgttaaatcccacgccaagctcgtttacgacaacgtctccgac
tggatcgaaggtcaaggcgactgggcacccgcggatgagatcgctgagcagctcaccgca
ctgcgtgatttgaccgaggcgcgtaccgcttggcgtaatgaacacgcgctggtgtttaaa
gaccgcccggactacgtgtttgatctcgatcccgccggtaatgtactggcggtacgcacc
gaagagcgtcgcattgccaaccgcatgatcgaagagtcgatgattgtggccaacgcctgc
tgcgcggacttcctggcccagcatatcggccacggtatctttaacgtgcaccgcgccttc
gagccggaaaaagccgaagccgcccaggagtttttggcaggtcaggagatcgtcgtcgag
cgcgaagcactcaccgagctggcccgctataccgagctaaagcgtgcgctggaaagccgc
gatgatgcctggttggatgcgcgcctgcgccgtttccagggctttaccatgatgtccgca
cagcccggcccgcactttggcctgggcctagccgcctacgccacctggacctctccgatt
cgaaagtatggcgatatggttaatcaccgcctgatcaagcgcgtactgaaaggcgagcag
gcacctgcagaagccacccagcagctcaccgagcagctaacggagcgtcgccgcctgaac
cgtatggccgagcgcgatgtgaaggattggctctacgtgcgttacctcacgccctccgcg
cagaaccaggacacttttgaggccgaaatcatggccatcaaccgtggaggtatgcgcgtt
cgtctgctggaaaatggcgcgacggcgtttgtgcccccttga
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