Vreelandella olivaria: HORIV_27080
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Entry
HORIV_27080 CDS
T06227
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hol
Vreelandella olivaria
Pathway
hol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HORIV_27080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hol03019
]
HORIV_27080
03009 Ribosome biogenesis [BR:
hol03009
]
HORIV_27080
Enzymes [BR:
hol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HORIV_27080
Messenger RNA biogenesis [BR:
hol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HORIV_27080
Ribosome biogenesis [BR:
hol03009
]
Prokaryotic type
rRNA processing factors
HORIV_27080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
BBI50287
LinkDB
All DBs
Position
complement(1881074..1882777)
Genome browser
AA seq
567 aa
AA seq
DB search
MIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALGFIRQVMPSYQQKIKLYADEVPLF
SRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARATRGSDIEETALQTNSEA
ADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLME
MSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVP
VATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFEL
STDTEVGKEPAPSFMPPAQRAEAAVKSVTHNAPAPASLQTEEKAPVAAPVAKAAPVASEQ
PSVIGRFIRGFAKLLGSDENSAETTPEPKVETPTPRKQSERRPSQRSNESRQRPSRGDSN
ARPEPKAEPKAEQSAEQKTEQRSSAPRPASDDNGDKRSGPSRTRNRRRHPQQEDANGQEA
ANKAPRKETKADSSSKESSKESGSGKSATQKESRRDNSGDKIATLSAMKRPKAQRLKPQK
RSRTTVSQSVPATTRVTARAPRRSTPG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgatctaccgggaatccaacgtcatcattcgcgctatgcgcgactacctgcgccaggac
atcggcgaagtcttgatcgacagccccgagattcacgctgaggcgctgggctttattcgc
caggtgatgccgtcgtatcagcagaagatcaagctctacgcggacgaagtaccgctattc
tcacgcttccagatcgaatcgcaaatcgaaaccgcctaccagcgtgaagtaaagcttccc
tccggtggctcgatcgtgatcgatcacaccgaagcactggtttccatcgatatcaactcc
gcccgcgctacccgcggcagcgacattgaagagacggcactacaaaccaactctgaagcc
gcggacgaaatcgcccgccagctgcgcctgcgcgatatcggcggcttagttgttatcgac
tttatcgatatggggcctgcgcgcaaccagcgggaagttgaaaaccgcatgcgcgatgcc
ctcaagctggatcgcgcccgggttcagatcggccgcatttcgcgctttggtctgatggaa
atgtcccgccagcgcctgcgaccttcactgggtgaaaccagcggcgtggtctgcccgcgc
tgtaatggccagggcaccattcgcgatgtgcgttcactctccctgtctatcatgcgcctg
attgaagaagaggccatgaaagagaatagcgcgcaaattcgcgccatcctgccggtaccc
gtagcgacttacctgctcaatgaaaaacgcagcgtgctggctgatcttgagtctcgccag
aatgtgcgtgtcgtactgctgcccaatccggatatggatacgcctcactacgacgtacag
cgcctgcgtgatgatcacctggacgaggacgacactcagagcctatcgagctttgagctc
tccaccgataccgaagtaggcaaagagccggcacccagcttcatgccgcccgctcaacgg
gccgaagctgccgtcaagagcgtcacccataacgcccctgcacctgcatcactgcaaacg
gaagagaaggcgcctgttgcggccccggtggccaaggcagcaccggtagcgagcgagcag
cctagtgttatcggtcgctttatccgtggtttcgcaaaactgctgggtagcgacgaaaac
agtgctgagaccacccctgagcccaaggttgagacccctacgccacgcaagcagagcgag
cgtagaccctctcagcgcagcaacgagtcgcggcagcggccttcacgcggcgatagcaac
gcccgccctgagccaaaagctgaaccaaaagcagaacaaagcgccgagcaaaaaaccgag
cagcgcagtagcgcgccacgccctgccagtgacgataatggcgataagcgcagcggccct
agccgcacccgcaaccgccgtcgtcacccccagcaggaggatgcgaacggacaagaggcc
gctaacaaagcgcctcgtaaagagactaaagccgacagctcgtccaaagagagctctaaa
gagagcggcagtggcaaaagcgcaacccagaaagagtcacgtcgggataacagtggtgac
aaaatcgcgacactcagcgcgatgaagcggccaaaagcgcagaggctaaaaccccagaag
cgaagcaggacgacggtaagccaaagcgtacccgcaacaacccgcgtaaccgcacgcgca
ccaaggcgatcaaccccaggctga
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