Homoserinibacter sp. YIM 151385: OF852_07920
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Entry
OF852_07920 CDS
T08733
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hom
Homoserinibacter sp. YIM 151385
Brite
KEGG Orthology (KO) [BR:
hom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hom03032
]
OF852_07920 (topA)
03400 DNA repair and recombination proteins [BR:
hom03400
]
OF852_07920 (topA)
Enzymes [BR:
hom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OF852_07920 (topA)
DNA replication proteins [BR:
hom03032
]
Prokaryotic type
DNA Topoisomerases
OF852_07920 (topA)
DNA repair and recombination proteins [BR:
hom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OF852_07920 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WBU36863
LinkDB
All DBs
Position
complement(1632383..1635070)
Genome browser
AA seq
895 aa
AA seq
DB search
MPATKKLVIVESPAKAKTIAQYLGDGYEVQASVGHIRDLVEPKNLPAELKKGSLGKFSID
VDNGFQPYYVVSDEKKRTVTDLKKALKEADELYLATDEDREGEAIAWHLLEVLKPKVPVK
RMVFHEITKEAIQRAQENTRELDTALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVSAVYWDLSTELGTSAEEGAAGFQARLARLDGRRIATGRDF
DDRGALKSDAVALDEAAAETLASALRAESTTVTVASVESKPYTRRPAAPFTTSTLQQEAA
RKLRFSARQTMSVAQALYENGHITYMRTDSPSLSKQAIDAARSQAARLYGAETVPEKPRA
YAGKSKNAQEAHEAIRPAGDVFKTPSELSGTLRGNDFKLYDLIWKRTVASQMADARGSTA
TVTIQAKTADAGEAELTASGTVITFRGFLAAYEEGRDEERESAPEAREERLPQLAEGQSL
VLREVEAKGHETSPPPRYTEASLVKTLEELGIGRPSTYAAIISTIVDRGYVTPRGTALVP
SWIAFSVVRLLEEYFGDLVQYDFTASMEDDLDRIAGGGEDRVEWLKGFYFGGAGHRGLRN
VIDNLGEIDARDINSIRIADDITLRIGKYGPYLEVPAPEGETPRRVNIPEELAPDELTPA
KARELIDAPVVGDRVLGTDPDSGKQIVVKDGRFGPYVTELEPEPEVAEEAPKPSRKKKEA
APKPRTASLFKSMDPATVDFDTAIRLLALPRVVGQDPESGDDITTQNGRYGAYLKKGSET
RSLESEDQIFELDLAGALALLAQPKYGAKRASSALKEFDADPESGKPIRVRDGRFGPYVT
DGITNATIPRGEDVEAVDFDRAVQLLADKRAKGPVKRKAPAKKAPAKRSTAAKKK
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgccaccaagaagctcgtcatcgtcgagtcgccggcgaaggccaagacgatcgcc
cagtacctcggcgacggctacgaggtccaggcctccgtcggccacatccgcgacctcgtc
gagccgaagaacctcccggccgagctcaagaagggctcgctcggcaagttctcgatcgat
gtcgacaacgggttccagccgtactacgtcgtgagcgacgagaagaagcgcaccgtcacc
gacctcaagaaggcgctgaaggaggccgacgagctctacctcgcgacggatgaggaccgc
gagggcgaagccatcgcgtggcacctcctcgaggtgctgaagcccaaggtgccggtcaag
cgcatggtcttccacgagatcacgaaggaggccatccagcgcgcgcaggagaacactcgc
gagctcgacacggccctcgtcgacgcgcaggagacccgccgcatcctcgaccgcctctac
ggctacgaggtctcgccggtgctctggcgcaaggtcgggccgggcctctccgcggggcgc
gtgcagtccgccgcgacccgtctcgtcgtcgaccgcgagcgcgagcgcctcgccttcgtc
tccgccgtctactgggatctctccaccgagctcggcacctcggccgaggagggcgcggcg
gggttccaggcgcgtctcgcgcgcctcgacgggcgccgcatcgcgaccggtcgcgacttc
gacgaccgcggcgcgctgaagagcgacgcggtcgccctcgacgaggcggccgccgagacg
ctcgcgtccgcgctccgcgccgagtcgaccacggtgaccgtcgcgagcgtcgagtcgaag
ccctacacccgccgaccggccgcgcccttcacgacctccacgctccagcaggaggccgcc
cgcaagctccgcttctccgcccgccagaccatgagcgtcgcgcaggccctctacgagaac
gggcacatcacctacatgcgcaccgactcgccctcgctctcgaagcaggcgatcgacgcg
gcgcgctcgcaggccgctcgcctctacggcgcggagaccgtgcccgagaagccgcgcgcc
tacgccggcaagtccaagaacgcgcaggaggcgcacgaggcgatccgccccgcgggcgac
gtcttcaagaccccgtccgagctcagcggcacgctgcgcggcaacgacttcaagctctac
gacctcatctggaagcggaccgtcgcctcgcagatggccgacgcgcgcggctccaccgcg
accgtcaccatccaggcgaagacggctgacgcgggcgaggccgagctgaccgcctccggc
accgtcatcaccttccgcggcttcctcgccgcctacgaggagggtcgcgacgaggagcgc
gaaagcgcccccgaggcccgcgaggagcgcctgccgcagctcgccgagggccagagcctg
gtgctccgcgaggtggaggccaaggggcacgagacgagcccgccgccccgctacacggag
gcgagcctcgtcaagacgctcgaggagctcggcatcgggcggccctcgacctacgcggcc
atcatctcgacgatcgtcgaccgcggctacgtcaccccccgcggcaccgcgctcgtgccg
agctggatcgccttcagcgtcgtccggctcctcgaggagtacttcggcgacctcgtgcag
tacgacttcaccgcgagcatggaggacgacctcgatcgcatcgcgggcggcggcgaggat
cgcgtcgagtggctgaaaggcttctacttcggcggcgccgggcaccgcggcctccgcaac
gtcatcgacaacctcggcgagatcgacgcgcgcgacatcaactcgatccgcatcgccgac
gacatcaccctccgcatcgggaagtacggcccgtacctcgaggtgccggcgcccgagggc
gagaccccgcggcgcgtgaacatccccgaggagctggcccccgacgagctcacgcccgcg
aaggcgcgcgagctcatcgacgcgcccgtcgtcggcgatcgggtgctcggcaccgacccc
gacagcggcaagcagatcgtcgtgaaggacggccgcttcggcccctacgtcaccgagctc
gagccggagcccgaggtcgcggaggaggcgcccaagccgagccgcaagaagaaggaggcc
gcgccgaagccgcgcaccgcatccctcttcaagtccatggacccggcgacggtcgacttc
gacaccgcgatccgcctcctcgcgctgccgcgcgtcgtcggccaggatccggagtcgggc
gacgacatcaccacgcagaacggccgctacggcgcctacctcaagaagggctccgagacg
cgctccctcgagagcgaggaccagatcttcgagctcgacctcgccggcgccctcgcgctg
ctcgcgcagccgaagtacggcgcgaagcgcgcatcgagtgccctcaaggagttcgacgcc
gaccccgagagcggcaagccgatccgggtgcgcgacggccgcttcggcccctacgtcacc
gacgggatcacgaatgcgacgatcccgcgcggcgaggacgtcgaggcggtcgacttcgac
cgcgccgtccagctgctcgccgacaagcgcgcgaaggggccggtgaagcgcaaggcgccc
gccaagaaggcgcccgcgaagcgcagcaccgccgcgaagaagaagtga
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