Halothermothrix orenii: Hore_01100
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Entry
Hore_01100 CDS
T00838
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hor
Halothermothrix orenii
Pathway
hor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Hore_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hor03021
]
Hore_01100
03400 DNA repair and recombination proteins [BR:
hor03400
]
Hore_01100
Enzymes [BR:
hor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Hore_01100
Transcription machinery [BR:
hor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Hore_01100
DNA repair and recombination proteins [BR:
hor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Hore_01100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl_2
NusG_add
MCM_C
Motif
Other DBs
NCBI-ProteinID:
ACL68871
UniProt:
B8D0B7
LinkDB
All DBs
Position
127965..131462
Genome browser
AA seq
1165 aa
AA seq
DB search
MKKGERPLFNVNSFDSMKISVASPEQIRDWSRGEVKKPETINYRTLKPEKDGLFCEKIFG
PTKDYECHCGKYKRVRYKGVVCDRCGVEVTHSKVRRERMGHIELAAPCTHIWFFKGIPSR
LGLILDMSPRALEKVIYFVSYIVIDAGESPLSEKQLLSETEYREARQKYGDSFEAGMGAE
AVKELLKKIDVGAEVKRLKKEVKEASGQRRKRAIRRLEVLDGLNKSGIKPEWLVLEVIPV
IPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIIRNEKRMLQEAVD
ALIDNGRRGRPVTGAGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMH
QCGLPKKMALELFKPFVMKGLVDKGLAHNIKNAKRMVERVDDEVWGVLEEVIEDHPVLLN
RAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQIESRVLM
LSTSNILAPSDGSPITVPTQDMVIGIYYLTTIKDGEKGEGKLFASPEEAIKAYDTGKVSL
QARVKVRLDGKLVETSPGRVIFNEALPEKMEFINYQVDKSELGDIVADLHEKFGNDITAR
ALDKIKELGYDFATRSGITIAVSDASISPAKEKILNEAEEEVRNIEQHYRRGAITENERY
QKVVDIWNKAKDAVTDALLDHLGEDNNIYMMAISGARGNTSQISQLAGMRGLMADPSGRI
LDIPIRSSFREGLNVMEFFISTHGARKGLADTAIRTADSGYLTRRLVDVSQDVIIREDDC
GTENGIYVEAIGGKGDDAIETLAERCIGRLAAEDIVDPSNDKVIVKRDELITRDKMKEIN
AAGIERVKIRSVLTCETKHGVCRKCYGRNLATGKLVDIGEAIGIIAAQSIGEPGTQLTMR
TFHTGGVAGDDITQGLPRVEELFEGRTPKGQAIITEKTGRVKILEKRNSRRIVIEDDDGK
KKTYQVPYGSKVIVKDGQMVKAGDKLTEGPLDPSTVLKIKGVDEVQDYLLQEVQKVYRSQ
GVEINDKHIEVIIRQMMRKVRIIDPGDTDFLPGSLVDRLEFNEINHKMVDEGKQPATCKP
ELLGITKASLATDSFLSAASFQETTRVLTEASLEGKVDPLLGLKENVIIGQLIPAGTGMK
YYRDISMLDDNGQPIPGSIDELVEE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaaggggagaggcccttgtttaatgtaaatagttttgactccatgaaaataagt
gttgcttcaccggagcaaattcgtgactggtcccgcggggaagttaaaaaaccagaaacg
attaattatagaacgcttaaacctgaaaaagatggtcttttttgcgagaaaatttttggc
cctacaaaagattatgaatgtcattgtggaaaatataagcgggtcaggtataagggggtt
gtctgtgaccgctgtggtgttgaagtaacccattctaaagtgagacgggaaaggatgggg
catattgagttagcagccccctgcactcacatctggttttttaaagggatccccagcagg
ctaggtcttattctggatatgtctccccgggcccttgaaaaagtaatttatttcgtatca
tatatcgttattgatgcaggagagtcaccactgagtgaaaaacaactcctttctgaaaca
gaatatagagaagcccgacagaaatatggagattcttttgaggccggtatgggagctgaa
gctgttaaagagcttttgaaaaaaattgatgtcggagcagaggttaaacggctcaaaaaa
gaagtaaaagaagcaagtggtcagagaaggaaaagagctatcaggagacttgaggtcctt
gacggcttaaataaatctggaattaagccagagtggctggttcttgaagttattcctgtt
atacccccagacctacgaccaatggtacagcttgacggaggccgctttgctacttctgac
cttaatgacctttaccgacgggtaataaacagaaataacaggcttaaaaggttgcttgat
ctgggagccccagagattataatcagaaatgagaaacgaatgctccaggaagcagtggat
gctttaatagataatggtcggcgtggccgccctgttaccggagccggtaatagaccatta
aaatccctcagtgatatgttaaagggtaagcagggaaggttcaggcagaatcttctcggt
aaaagggtcgactattcaggtaggtcagttattgttgttggtccagaattaaaaatgcat
caatgtggacttcccaagaaaatggctcttgaactgtttaagccttttgtaatgaagggg
ttagttgataaaggacttgctcataatattaaaaatgccaaaaggatggtagaaagggta
gatgatgaagtctggggggtactggaagaggtaattgaagatcatcctgttcttttaaac
cgtgctcccacccttcatagactcggaattcaggcctttgaacctgttctggttgaaggt
aaggccattaaattacatcccctggtctgtactgcttataatgctgactttgacggggac
cagatggcagttcatgtaccattatcggcagaggcccagatagaatcacgtgttctaatg
ttatcaaccagcaatattctggcaccttcagatggaagtccgatcacagtacctacccag
gatatggtaattggaatttactatctgaccaccataaaagatggtgaaaaaggtgaaggc
aaattatttgcttcccctgaagaggccattaaagcctatgatacaggaaaggttagtctg
caggccagagtaaaagtaagattagatggaaaactggtagaaacatcaccggggcgggta
atatttaatgaagccttacctgaaaaaatggaatttattaattatcaggttgataaaagt
gagctgggcgatattgtggctgatttacatgagaaatttggaaatgatataacagccaga
gccctggataaaattaaagaactgggttatgattttgcgacccggtccggtattactatt
gctgtcagtgatgcttctatatcaccggccaaagagaaaattctgaatgaggctgaagaa
gaagttagaaatatagagcagcattatagaagaggggctataaccgagaatgaaaggtac
cagaaggttgtagatatctggaacaaagctaaagatgctgttactgatgctttactcgat
cacctgggtgaagacaacaacatttatatgatggctatttccggtgcccgtggtaatact
tctcagatatcacagttggccggtatgcgtggccttatggctgatccttccggtcgaatt
cttgatattccaatccgttccagtttccgtgaagggttaaatgttatggaattttttatt
tcaacccacggagccaggaaaggtctggctgatacagccatcagaacagcagactccgga
tacttgacaaggcgtctggttgacgtctcccaggatgtaattatcagagaagatgactgt
ggtactgaaaatggcatttatgtagaagctatcggtggtaaaggtgatgatgccattgag
actcttgccgaaaggtgtattgggcgtctggctgcagaagatatagttgatccctctaat
gataaagtaattgtcaaaagggatgagttgataaccagagacaaaatgaaagaaataaat
gcggccggtatcgaaagggttaaaatcaggtctgtattgacctgtgaaaccaaacacggt
gtttgtcgtaagtgttatggccggaatctggctaccggtaaacttgttgatattggggaa
gcaatcggcattattgctgcccaatctatcggagagccaggaacccagcttaccatgagg
accttccataccggtggtgttgccggtgatgatatcacccagggtcttcccagggttgaa
gagttatttgaaggaaggaccccgaaaggtcaggctataataactgaaaagaccggacgg
gttaaaatactggaaaagagaaacagtagacggattgttatcgaagatgatgatggtaag
aagaaaacttaccaggttccatatgggtccaaggttattgtaaaggatggccagatggtt
aaggccggggataaactgactgaaggtccccttgatcccagtactgtactgaaaatcaag
ggtgttgatgaggttcaggattatctcctacaggaagtccagaaggtataccgctcccag
ggtgttgaaattaatgataaacatattgaagtaatcataaggcagatgatgaggaaagtg
agaattattgaccctggtgatactgacttcctgccaggaagcctggtagaccggctggaa
tttaatgagattaaccataaaatggttgacgaagggaaacaaccagccacatgtaaacca
gaattactgggtattaccaaggcatccctggctactgacagtttcctgtctgcagcttca
ttccaggaaactacccgggttttaacagaagcatccttggagggtaaagttgatcccctc
ctgggccttaaagagaatgtgattatcggtcagttaattccggccggtacaggtatgaag
tattatcgtgatatatcgatgcttgatgataatgggcaaccgattccgggtagtattgat
gaactggttgaggaataa
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integrated database retrieval system
