Halothermothrix orenii: Hore_05480
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Entry
Hore_05480 CDS
T00838
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hor
Halothermothrix orenii
Pathway
hor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hore_05480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hor03019
]
Hore_05480
03009 Ribosome biogenesis [BR:
hor03009
]
Hore_05480
Enzymes [BR:
hor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hore_05480
Messenger RNA biogenesis [BR:
hor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hore_05480
Ribosome biogenesis [BR:
hor03009
]
Prokaryotic type
rRNA helicases
Hore_05480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACL69305
UniProt:
B8D278
LinkDB
All DBs
Position
complement(596826..598409)
Genome browser
AA seq
527 aa
AA seq
DB search
MKKVKFSELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGI
PLLEKIDTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKAL
KKGVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQ
TLFFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYEVRRSDKLKVLTRLIDL
YSPGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEILVAT
DVAARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRDIQK
YTKTRIIKQDIPTLTDIEQAKLENLINDLTDYIDREHLKKYIKIIENLLDDDYTAIEIAA
ALFKKYMENESSEGEINNNKLNDTGAEPGMVRLFINIGKKHNITPGHIVGAIAGETSLSG
RLIGAIDLYDNFTFVEVPEESSREVLKIMKNNYIKGKKINIEPAKPR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaggtaaaatttagtgaattaaatatttcaaaagaaatattaaaggctgttgaa
gatatgggatttgaagaaacaacccctattcagacaaaagcaatcccccctattcttaac
ggcaaagatataatcggacaggctcagacaggaactggcaaaacagccgcctttggaata
ccattattagaaaaaattgataccagaaacaaaaaacctcaggccattattttatgtcct
accagagaactggcgattcaggtcgctgaagaattaaaaagattggccaaatacaaacgt
agtttgtatacccttcctgtttatgggggacaatctataaaaaggcagattaaggccctg
aagaagggagtacaggttattataggtactcccggtagggttatggatcatatgcggcgg
ggcactctgaacctctcccatattaattttgttgtccttgatgaagctgatgtcatgctt
gatatgggctttattgatgatattaaaacaatcttaaaagatatccccaatgacagacaa
actttgttcttctcagctacaataccagagacaatccttgatttgagtaaaaggtatcaa
aagaaatcgcagtttataaaaatagcccacgaaaaattaacagtaccaggaattgaacag
tactattatgaagtcagacgaagcgataaattaaaggtattaacccgtttaattgacctt
tattcgccaggtctttctcttattttttgtaataccaggaaaatggtagaggaattaaat
atacagcttcaggcaagaggttatctatctgatgcacttcatggcgggtttaatcagaat
caacgggaccgggttatggacaagtttcgaaatggaataattgaaattcttgtagcaaca
gatgttgcagcaagaggtattgatgtcaatggggttgaggccgtttttaattatgatgtc
ccccaggatactgattactatgttcatagaataggtagaacgggccgggctggtaaaacc
ggcaaagcctttacctttgtagttggaaaggatatttataaattacgggacatacaaaaa
tatacaaaaacacgtattatcaaacaggatattcccacccttactgatatagaacaggct
aagcttgaaaatttaattaatgacttaacagattatattgatagagaacatttgaaaaag
tatattaaaatcatagaaaacctcctcgatgatgattatacggctatagaaatcgcagct
gccctttttaaaaaatatatggaaaacgagtcatctgagggagaaataaacaacaataaa
ttaaatgataccggtgcagagccaggaatggtcaggttatttataaatattggcaaaaaa
cacaacattaccccgggtcatattgttggagctattgctggtgaaaccagtttatccggt
aggttaattggagctatagatctttatgataatttcacttttgttgaagttcctgaagaa
agtagtcgagaagtcctgaagattatgaaaaacaattatataaaaggtaaaaaaattaat
atagaaccggcaaaacccagataa
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