Halothermothrix orenii: Hore_15850
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Entry
Hore_15850 CDS
T00838
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
hor
Halothermothrix orenii
Pathway
hor02020
Two-component system
hor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hor00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hore_15850
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hore_15850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hor03021
]
Hore_15850
Transcription machinery [BR:
hor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hore_15850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_Crp_2
HTH_17
HTH_Tnp_4
Sigma70_r4
Xre-like-HTH
HTH_23
HTH_3
HTH_21
MarR
MarR_2
HTH_11
HTH_AraC
Phage_CII
HTH_IclR
HTH_Tnp_Tc3_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ACL70334
UniProt:
B8CYG5
LinkDB
All DBs
Position
complement(1697994..1699304)
Genome browser
AA seq
436 aa
AA seq
DB search
MDLRFDLDLNQKQELVMTPKLKLAIKLLQYSYQELENYLEEELKRNPLLEKESSNGDYFQ
NHKNYSDYDYSNDRNSDNNYENFVTYKINLTEYLESQLYQVCEDHELKIARYIIGNLDDR
GYLRTTVSEIGHHFKVEESEVEKVLKKVQQLDPVGVGARNIREALLVKLGNLGDDENTEI
AKNIVTNFLDELASGKIKEIIKKIKKDKEQVLKAINLIKELEPYPAAGFAAKENTGFIVP
DVIVRKVEGKFVVEMNSSLTPSLKINPYYYKMLQDVGGESREYLEKNYKSALWLIRSIEQ
RRITIYRIAMAITNRQQEFLEKGIKYLKPLTMEELADTLGIHESTVSRATTSKYIQTPQG
IYELKFFFSGGVNGVSTTSIKAYLKEYIDKEGAKNPLSDKKLARILKDEIGVNISRRTVA
KYRKQMGIPSSRKRKK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggatttaaggtttgaccttgatcttaatcagaaacaggaactggtgatgaccccgaaa
ttgaagctggctataaaacttttgcagtattcttatcaggaacttgagaattaccttgaa
gaggagttaaagcgtaacccccttttagagaaagaatcttcaaatggagattattttcag
aatcataagaattattccgattatgattatagtaatgacagaaatagtgataataattat
gaaaattttgtgacttataaaattaatttaacggaatacctcgagtctcagttgtatcag
gtctgtgaagatcacgaacttaaaattgcaagatatatcatcggtaacctggatgacagg
ggttatttaaggacgacagtaagtgaaatcggtcatcattttaaggtagaagaaagtgaa
gttgagaaagttttaaagaaagtgcagcagcttgatccagtgggggttggggcccggaat
attagagaagccctcctggtaaagctgggaaatctgggagatgatgaaaacactgaaata
gctaaaaatattgtgactaactttctggatgaactggcctcgggtaaaatcaaggagatt
ataaaaaagattaaaaaggataaagaacaggttttaaaggctattaatttaataaaagag
ctggaaccctaccctgctgccggttttgctgcaaaagaaaataccggttttattgtccct
gatgttattgtgagaaaggttgaggggaaatttgtggttgaaatgaacagtagcttaact
ccctcattgaaaataaacccctattattataaaatgctacaggatgttggtggggaatcc
cgggaatacctggagaaaaattataagtcagccctctggttaattagatcaatagaacaa
cggcgaataacaatttaccgcatagctatggctattaccaaccgtcaacaggaatttctg
gaaaagggtataaagtatttaaaaccactgactatggaagagctggctgatacgctgggc
attcatgaatccacagtaagcagggctacaaccagtaaatatattcaaaccccacagggg
atttacgaactaaagttttttttcagtggtggggtgaatggggtatctacaaccagtatt
aaggcctatcttaaggaatatatagataaagaaggggcaaaaaatcccctgagtgataaa
aaactggccagaattttgaaagatgaaattggtgttaatatttccaggaggactgtagcc
aagtaccggaagcaaatgggaattccttcttcccggaaacggaagaagtaa
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