Helcococcus ovis: EQF90_002075
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Entry
EQF90_002075 CDS
T09706
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hov
Helcococcus ovis
Pathway
hov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EQF90_002075 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hov03021
]
EQF90_002075 (rpoB)
03400 DNA repair and recombination proteins [BR:
hov03400
]
EQF90_002075 (rpoB)
Enzymes [BR:
hov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EQF90_002075 (rpoB)
Transcription machinery [BR:
hov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EQF90_002075 (rpoB)
DNA repair and recombination proteins [BR:
hov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EQF90_002075 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF8432
Motif
Other DBs
NCBI-ProteinID:
WNZ01659
LinkDB
All DBs
Position
441444..445085
Genome browser
AA seq
1213 aa
AA seq
DB search
MNNHTTVYGIRNRESFSRIPETLQLPNLLDIQKGSYEWFLKHGLKEVFEDISPIVDHSGN
IHLQFLDYHFDEKPKYSEQESKDRDANYAKKMKVNVRLIILEDGKTKEIKEEEVLMMDDF
PLMTDNGTFIINGAERVVVSQLVRSPGVYYSEDFDKNGKKTISSTIIPNRGAWIEYDTDA
YGALTIRIDRTRKLPATTLIRALILDNNDEIKEVFGESEVLGETLEKEVSRSKEEALIEI
YKKLKPGDPASVEAASSLLHNLFFDTRRYDLSKAGRYTFNKKLAIRSRIREKYAANDIVD
EYGEILASKGEFITLEKAIEIENAGINSVDIKVSEDSSEIVRVVGNHYVDIKQFEEIKDL
DLSELRLSEKVFYPEMKKIIESFTDDMTDKQKVKLISDNKELISSNTITMEDIIASFSYQ
LNLYQGVGKIDDIDHLGNRRVRSVGELLQNQFRIGLSRMERVIRERMTTSDPNMLTPKGL
LNNRPVSAAIKEFFGSSQLSQFMDQTNPISELTHKRRLSALGPGGLSRDRAGYEVRDVHT
SHYGRVCPIETPEGPNIGLITSLTTYGRINDYGFIETPYRKVEKGTGRVTSEIHYLTADE
EDIYIKAQANEPLDENGVFINERVSSRGINAVNDVYPKEEIDYMDVSPQQIVSVGASLIP
FLENDDATRALMGANMQRQAVPLLKSEAPIIATGIEYRTAKDSGVVIVAKNSGTVKYVGD
ERIQIEKDIPDENGKYDEYTVLKFKRANQGTTFNQRPIVKIGQHVEAGEIISDGPSTDLG
ELALGKNILIAFMTWEGYNYEDAMLLNEKLVIDDVLTSVHIEEHTAEARETKLGPEDITR
DIPSIGDDMRKDLDQDGIIRIGAEVQAGDILVGKVTPKGETELSPEERLLRAIFGEKARE
VRDTSLRVPHGEAGVVVDIKKYSRDNGDELAPGINQVIRVYIATKRKISVGDKMCGRHGN
KGVVSRILPIEDMPFLPNGDPVQIVLNPLGVPSRMNIGQVLEVHLGMAAKKLGWHVATPV
FDGASDKDIEEALEAAGYSKTGKIQLRDGRTGETFANNVTVGYMYMLKLHHLVDEKIHAR
STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTVKSDDIIGRVKTYE
AIVKGENIPEPGTPESFKVLTKELQSLALNVKLLDEKGEEVILAENTEENDDYRQIERMV
EDKEDYPEQSFIN
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcatacaacagtgtatggtataagaaatagagaaagtttctctagaattcca
gaaacattgcaactacctaatttgttagacattcaaaaaggtagttatgagtggttttta
aaacacggattaaaagaagtgtttgaagatatatctccaattgtagaccattcaggaaat
atacatttacaatttttagattatcattttgatgaaaaaccaaaatattcagaacaggaa
tctaaagatagagatgcaaactatgctaaaaaaatgaaagtaaatgtacgtcttataatt
ttagaagatggaaaaactaaagaaataaaagaagaagaagttttaatgatggatgatttt
ccacttatgactgataatggtacatttattataaatggtgcagaaagggtagttgtatct
caattagttagatcaccgggagtatattacagtgaagattttgataaaaacggaaaaaaa
acaatttcttctacgattattcctaatagaggagcatggattgaatatgatacagatgca
tatggtgctttgacaattagaattgatagaacaagaaaattaccagctactacattaatt
agagctcttattttagataataatgatgaaataaaagaagtatttggtgaatcggaagtt
ttaggtgaaacattagaaaaagaagtttcaaggtctaaagaagaagcattgattgaaatt
tacaaaaaattaaaaccgggagatcctgcatcagtagaagctgcaagttctttgttacat
aatctattttttgatacaagaagatatgatttatcaaaggcgggcagatatacatttaac
aaaaaattagcaataagaagcagaattagggaaaaatatgcagctaacgatattgttgat
gaatatggtgaaattttggcatccaagggagaatttattactctagaaaaagcaattgaa
attgaaaatgcaggtataaattctgtagatattaaagtttccgaagacagctctgaaata
gttagagttgtaggtaatcattatgttgatataaaacaatttgaagaaataaaggatctt
gatttatcagaattaaggttatcggaaaaagttttttatccagaaatgaagaaaattatt
gaatcatttacagatgatatgactgataagcaaaaagttaaattaatttctgataataag
gaattaatttcttcaaatacaataacaatggaagatattattgcaagtttttcatatcaa
ttaaacttataccaaggggttgggaaaattgatgatatagatcacttgggaaatagaaga
gttagatctgtgggtgaattattacaaaatcaatttagaattggtctttcaagaatggaa
agagtaataagagaaagaatgacaacatctgatcctaatatgttaactccaaaaggatta
ttaaataatagaccagtttcagctgcaattaaagaattcttcggttcatcacaattatct
caatttatggatcaaacaaaccctatttcagaattaacgcataagagaagactatctgct
ttaggacctggtggtttgtcaagagacagggcaggttatgaagttcgtgacgttcatact
tcacattacggtagagtatgtccaattgaaacacctgaaggaccaaatatcggtttgatt
acatctttaacaacatatggaagaattaatgactatggatttattgaaacaccatataga
aaggttgaaaaagggaccggtagggtaacgtctgaaatccactatttaacagctgatgaa
gaagatatctacataaaagctcaagctaatgaacctttagatgaaaatggtgtatttata
aatgaaagagtttcctcaagaggtataaatgcggttaatgacgtttatccaaaagaggaa
atagattatatggatgtttcaccacaacaaatagtttcagtaggggcatcattgattcca
ttcttagaaaatgacgatgcaactcgtgcattgatgggtgcaaacatgcaaagacaagct
gtgcctttattaaaatcagaagctccaattatagcaaccggtatagagtatagaacagct
aaagactcaggagttgtaattgttgctaaaaattctggtacagtaaaatacgtaggggat
gaaagaattcaaattgaaaaagacatccctgatgaaaatggaaaatatgatgaatataca
gtactaaaatttaagagagccaaccaaggtacaacatttaaccaaagaccaattgttaaa
atcggtcaacacgttgaagctggagaaataatttcagatggaccttcaacagatttagga
gaattagctttaggtaaaaacatcttgatagcatttatgacatgggaaggttacaattat
gaagatgccatgttattaaatgaaaaattggttattgatgatgttttaacatctgttcat
atcgaagaacacacagctgaggctagagaaacaaaattaggacctgaagatatcactaga
gatataccaagtattggtgatgatatgagaaaagatttagatcaagatggtattataaga
atcggtgctgaagtacaagctggagatatcttagttggtaaagtaactccaaaaggagaa
acagaattatcaccggaagaaagattattaagggctatctttggcgaaaaagctagagaa
gttagagatacttctttaagagttcctcacggtgaagccggtgttgttgttgatattaag
aaatattcaagagataatggagatgaattagctccgggaattaatcaagttataagggtt
tatattgcaacaaagagaaagatttctgttggagataagatgtgtggtcgtcacggtaat
aaaggggttgtatcaagaatattgccaattgaagatatgccatttttaccaaatggggat
ccggttcaaatagttttaaatccattaggggtgccttcacgtatgaatattggacaagta
ctagaagttcacctgggtatggctgcgaaaaaactgggatggcatgtagctactccggta
tttgatggggcttcagataaagatattgaagaagctttagaagcggcaggatatagcaaa
acaggtaaaattcagcttagagatggtagaacgggagaaacatttgcaaataatgttaca
gtaggttatatgtatatgttgaaacttcaccatctagttgatgaaaaaattcacgcaaga
tctacgggaccatattctcttgtaacacaacaaccattgggtggtaaagcacaatttggt
ggacaaagatttggagaaatggaagtttgggcattagaagcttatggggcagcacataca
ttacaagaaatgttaactgtaaaatcagatgatattatcggcagagttaagacgtatgaa
gcaattgtaaaaggtgaaaatattccggaaccgggtacacctgaatcattcaaggtttta
actaaagaattacaatcattagcattgaatgtaaaattattagatgaaaaaggcgaagaa
gttattttagctgaaaatacagaagaaaatgatgattatcgtcaaatcgaaagaatggtt
gaagataaagaagattatccagaacaatcatttataaattaa
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integrated database retrieval system
