Helcococcus ovis: EQF90_002500
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Entry
EQF90_002500 CDS
T09706
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hov
Helcococcus ovis
Pathway
hov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EQF90_002500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hov03400
]
EQF90_002500 (mfd)
Enzymes [BR:
hov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EQF90_002500 (mfd)
DNA repair and recombination proteins [BR:
hov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EQF90_002500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
Cas3-like_C_2
UB2H
RecG_dom3_C
Glyco_tran_WecG
IstB_IS21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNZ01727
LinkDB
All DBs
Position
526418..529894
Genome browser
AA seq
1158 aa
AA seq
DB search
MIEKAYDSLFKAINENYNLIYSYGIIEQSTGHFIYELSNNSNRPVFVLCENDVIARKLFE
NLQNNNLKVDYFPDIELNYQNIEDLDYTNKAFRLKTIINLVNGEKNIIVSSISAVTRKVY
SKENFIKNSFEITINSEVDINELSKRLIKLGYKRRNIIQSKGEFAIRGDIIDIFQISDEY
PTRLELFDVDVDSIRKFNVNTQMSIKDIENFTIYPIQENYFDIDDIDKIIKEIDKDLQKT
NKNFDIEISQKVNAKFEKIKEQLEYQHDIDNIDLIIPYMNDKSGDLFDYISDNYLILLND
YTYINNNFRKSEKFRIEDIQSRIERGELLYKHQNIFYTLSYIENKLKNYKIINISGLLKN
IGNLQPDKIIEFKVRQNQSYHGHFDDFIHDLKFSLSNGYTIKIFTPNIDDANSLKIKLSE
FDLNSDIIENIKISNKKIKIIIGYLESGFDYFEEKEKFIAYSQIFRKVKKQKSKTVKNKD
IINYSDLVHGDLLVHDNYGIGKFVGIKNIEINNIRSDYIELHFKDDAKLFIPTTDMSMVS
KFVGNGDKKPALSKLGGTDWKKAKNKAKKAIEAIAEDLVKLYAKRAEIKGFEYSKDTPWQ
REFEDSFPYQETDAQLRSISEIKEDMESDKVMDRLLCGDVGYGKTEVALRAAFKAVMDGK
QVVMLAPTTILVNQHFHTMKSRFEDFPVNIDYLSRFKTPAQKKKVLEDLRKGNIDFIVGT
HAILSDNVEFKNLGLLIVDEEQRFGVKHKEKIKKISENIDVLTLSATPIPRTLQMSLSGI
RDLSLLDEYPANRLPVNTYVIEYDEEYIREAILREMARNGQVYFVYNEVKTIHKMYEKLK
EIVPEASIVISHGQMSTRELENILDDFTNNKYDILLTTTIIETGMDIHNVNTIIIYNADK
MGLSQLYQLKGRVGRSDRNSFAYFTYKQGKIMTEIAEKRLKAIKDFSELGCGYKVAMRDL
ELRGAGNLLGESQSGHIESVGYDLYVRMLKETIDEIKGIEVKNIDRQIKIDLNIDVYIPS
EYIKDENEKINIYKKISFIETSQDHYNIIDELTDRFGDIPQPVQNIVDISYIRSLMLSNN
IDELIEVDSEVMMRYTELDVFDFEKLKILSQAYKGTMRFSLINSPSIYIPKEKGYMIKLI
ELFELINNINKGENYEKN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaaaagcttatgatagcttatttaaggctattaatgaaaattacaatttaata
tattcttatggaataatagaacaatctacaggtcattttatttatgagttaagtaataac
tcaaatagacctgtttttgtgctgtgtgaaaatgatgtaatcgctagaaaactttttgaa
aatttgcaaaacaacaatcttaaagtagactattttcctgatatagaattaaattatcaa
aatattgaagatttggattatacaaataaagcatttaggcttaaaacgattataaattta
gttaatggagaaaaaaatattatcgtttcaagcatatcagctgtgactagaaaagtatat
tctaaagagaattttataaaaaatagttttgaaataactattaattctgaagttgatatt
aatgaattatcaaaaagattaattaaattaggatataaaagaagaaatattattcagtca
aaaggcgaatttgcaattagaggggatataatagatatatttcaaatttctgatgaatat
ccaacaagattagaattatttgatgttgatgttgattctattagaaaatttaatgtaaat
actcaaatgtctataaaagatattgaaaattttacaatatatcctattcaggaaaattac
tttgatattgatgatatagataaaattataaaagaaatagataaagatcttcaaaaaaca
aataagaactttgacattgaaatttcacaaaaagtaaatgctaaatttgaaaaaataaag
gaacaacttgaataccaacatgatatagataatattgatttaattataccgtatatgaat
gataaaagtggcgatctttttgattatatatcagacaattatttaattttattgaatgat
tacacttatattaataataattttaggaaatcagaaaagtttagaattgaagatattcag
tcaagaattgaaaggggtgaacttttatataaacaccaaaatattttctataccttatct
tatattgaaaataaattaaaaaattataaaattataaatatttcaggtttattaaaaaat
atcggaaatcttcaacctgataaaataatagaatttaaggtaagacaaaatcagtcatat
catgggcattttgatgattttattcatgacttaaaattttcattatcaaatggatataca
ataaaaatatttacaccaaatattgatgatgctaatagtttaaagattaaattatctgaa
tttgacttgaattcagatattattgaaaatataaaaatatcaaataaaaaaattaaaata
attattggttatttagaaagtggatttgattattttgaagaaaaagaaaaatttatagcg
tattcacaaattttcaggaaagtaaaaaaacaaaaatcaaagactgtaaaaaacaaggat
attataaactattccgatttagtccatggagatttattagttcatgataattatggtatt
ggtaaatttgttgggataaaaaatatagagataaataatataagaagtgattatatcgaa
ttgcattttaaggatgatgcaaaattatttattccaactacagatatgagtatggtttct
aaatttgttggtaatggtgataaaaagccggcactttcaaaattgggaggaacagattgg
aaaaaagctaaaaataaagcaaaaaaagctattgaagcaattgcggaagatttagtaaaa
ttgtatgcgaaaagagctgaaattaagggctttgaatactctaaagatactccatggcaa
agagagtttgaggattcctttccatatcaagaaactgatgcacaattaagatcaatttca
gagattaaagaagatatggaatctgataaagtaatggatagattattatgtggtgatgta
gggtatggtaaaacagaggttgcattaagagctgcatttaaggctgttatggatggtaag
caagttgtaatgcttgcaccgacaacaattcttgtaaatcaacattttcatacaatgaag
tccagatttgaagattttcctgtaaatatagattatttatctagatttaagacaccggca
caaaagaaaaaagtgcttgaagatttaagaaagggaaatatcgattttatagttggtaca
catgccatactttctgataatgtagagtttaaaaatttaggattattgattgtagatgag
gagcaaagatttggtgtaaagcataaagaaaaaataaaaaaaataagtgaaaatattgat
gttttaactttgtcagctacacctattcctagaacacttcaaatgtctttgtccggtatt
agagatttatcattattagatgaatatccggcaaatagattacctgtaaatacttatgta
attgaatatgatgaagagtatatcagagaagctattttaagagaaatggcgagaaatgga
caagtgtattttgtatataatgaagttaaaactatacataaaatgtatgaaaagcttaaa
gaaattgtacctgaggctagtattgtgatttctcatggacaaatgagtacaagagaactt
gaaaatattttggatgattttacaaataataaatatgatattttacttacgactactatt
attgaaaccggtatggatatacataatgtaaacacaattataatatataatgctgacaag
atgggtttgtcacagttatatcaattgaaaggtagagttggtagatctgatagaaattca
tttgcctattttacttataagcaaggtaaaataatgactgaaatagcagaaaaaagactt
aaagctataaaggatttttctgaattgggttgcggttataaagttgcaatgagagatctt
gaacttagaggagcaggcaatttacttggagaaagtcaaagtgggcacatagaatccgta
ggttatgacttatatgtaagaatgcttaaggaaacaattgacgaaataaagggtattgaa
gttaaaaatattgatagacaaataaaaattgatttaaatattgatgtatatattccgtct
gaatacataaaagatgaaaatgaaaaaattaatatatataagaaaatttcatttattgaa
acatcccaagatcactataatataattgatgagttaactgatagatttggggatattcct
cagcctgttcaaaacattgttgacatatcgtatattagatcattaatgttatctaataat
attgatgaattaatagaggttgattctgaagtaatgatgaggtatactgagttagatgtt
tttgattttgaaaaattaaaaattttgtcacaagcatacaaaggcactatgagatttagt
ttaataaatagtccaagcatatatatacctaaagaaaagggatatatgataaaattaata
gaactatttgaattaataaataatataaataaaggagaaaattatgaaaaaaattaa
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