Helicobacter pylori HPAG1: HPAG1_0089
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Entry
HPAG1_0089 CDS
T00365
Name
(GenBank) RNA polymerase sigma-80 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
hpa
Helicobacter pylori HPAG1
Pathway
hpa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPAG1_0089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpa03021
]
HPAG1_0089
Transcription machinery [BR:
hpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPAG1_0089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
ABF84156
LinkDB
All DBs
Position
complement(90398..92476)
Genome browser
AA seq
692 aa
AA seq
DB search
MKAWVLYFMECPMKKKANEEKAPKRAKTEAKAEATQEIRQENKAKESNKAKESKIKENKA
KENKIKEAKAKELVPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKE
LCQKYQKKLVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSP
VRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERR
VKELFRSFDDDDENSVSDSKKDDDSEEDEENKERKKVVSEKDKKRVEKVQESFKALDKAK
KEWLKALEAPVDEKEDELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGD
GFEKELKRLEYKLPLFNDTLIANHKKILANITHMTKEDIIAQVPEATMVSVYMDLKKLFL
TKEASEEGFDLDPNKLKEILEQIKRGKLISDRAKNKMAQSNLRLVVSIAKRFTSRGLPFL
DLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINR
INKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDF
VEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELN
VTRERVRQIESSAIKKLRSPQYGRILRNYLRI
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcatgggttctttattttatggagtgtccaatgaaaaagaaagctaacgaagaa
aaagcccccaaaagagctaaaacagaagccaaagcagaagccacacaagaaattagacaa
gaaaacaaagctaaagaaagcaataaagccaaagagagcaaaatcaaagaaaataaagcc
aaagaaaacaaaatcaaagaagctaaagcgaaagaacttgttcctgttaaaaagcttagt
tttaatgaagcgttagaagaattgttcgctaattccttaagcgattgcgtttcttatgag
tctatcattcaaatcagcgcgaaagtccccactctagcccaagtcaaaaaaatcaaagaa
ttgtgccaaaaataccaaaagaaattagtcagctcttcagaatacgctaaaaaactcaat
gcgattgacaagattaaaaaaaccgaagaaaagcaaaaagttttagatgaagaattagaa
gatggctatgactttttgaaagaaaaggattttttagagtggagcagaagcgatagccca
gtacgcatgtatttgcgcgaaatgggggatataaaacttttaagcaaagatgaagagatt
gaattgagcaagcaaatccgcttgggtgaagacattattttagacgcgatttgctcggtg
ccgtatttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaaagaagg
gttaaagagcttttcaggagctttgatgatgacgatgaaaatagcgtgagcgattctaaa
aaagatgatgacagcgaagaagatgaagaaaacaaagaaaggaaaaaagtcgtttctgaa
aaagacaagaagcgtgtagaaaaggttcaagaaagctttaaagccctagacaaggctaaa
aaagaatggcttaaagcccttgaagcccctgtagatgaaaaagaagatgaattggtgcgt
ttattgactctagcttacaaacgccaaacgctcaaagacagactctatgacttagagcct
accagcaaactgattaatgaattagtcaaaacgatggaaaccactttaaaaagcggcgat
gggtttgaaaaagagttgaaacgcttggaatacaaactgcccttattcaatgacactctc
atcgctaaccataaaaaaatccttgccaatatcactcacatgactaaagaagatattatc
gctcaagtgccagaagcgactatggtgagcgtgtatatggatcttaaaaagctttttttg
actaaagaagcgagcgaagaaggctttgatctagaccccaacaagttaaaagaaatttta
gagcaaatcaagagagggaaattgatttccgatcgcgctaaaaacaaaatggctcaatcc
aatttaaggttggtggtgagcatcgctaaacgattcacaagtagaggcttacccttcttg
gatttgattcaagagggcaatattggcttgatgaaagcagtggataagtttgagcatgaa
aagggcttcaagttttctacctatgcgacctggtggatcaagcaagccatcagcagagcc
atagccgatcaagcccgcactatccgcatccccattcacatgattgacaccattaatcgc
atcaataaagtcatgcgcaaacacattcaagaaaccggcaaagagcctgatttagaagtg
gtggctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggttactaaa
gagcctatcagtttggaaaccccagtcggcaatgatgatgacggcaaatttggggatttc
gtggaagataaaaatatcgttagctccattgatcacatcatgcgagaagatttaaaagca
caaattgaaagcgttttggatcagttgaatgagcgagaaaaagcggtgattcgcatgcgt
tttgggcttttggacgatgaaagcgatcgaactttagaagaaattggtaaggaattgaat
gttactagagaaagggtgcgccagattgaaagctctgcgattaaaaaattgagaagcccg
caatacgggcgcattttaagaaattatttgcgcatttga
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