Helicobacter pylori HPAG1: HPAG1_1154
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Entry
HPAG1_1154 CDS
T00365
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpa
Helicobacter pylori HPAG1
Pathway
hpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPAG1_1154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpa03019
]
HPAG1_1154
03016 Transfer RNA biogenesis [BR:
hpa03016
]
HPAG1_1154
Enzymes [BR:
hpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPAG1_1154
Messenger RNA biogenesis [BR:
hpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPAG1_1154
Transfer RNA biogenesis [BR:
hpa03016
]
Prokaryotic type
tRNA degradation factors
HPAG1_1154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
ABF85221
UniProt:
Q1CS51
LinkDB
All DBs
Position
complement(1219358..1221424)
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVVKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEVFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIEWSLEKVK
KTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gtcaaacaagccaccagctctcttttataccgcttaggaaaaaccatcattttagcgagc
gtgtgcgtggaaagagagcctgttagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccaggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggctcatagacaggactttacgccctttattccct
aaagattaccgctaccccacacagatcactttaatggttttaagccatgatattgaaaat
gacttgcaggtttctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattggtaacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtccggaacgaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagaggttttcacgcctcaccaaaacgagctgctttttaaagaaagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcattaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgctaaaaaaatc
agcgaagcccactcagaattcagtttagaagaaattgaatggtctttagaaaaagtgaaa
aaaactgagataaggcgcatgattattcaagataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcagagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctatcaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagttctattggtgcggcttcaaggcgt
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggctcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaattcatgatctagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgctattttaagcgatattagc
ggcttagaagacgccgaaggcgatatggattttaagattgctgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccagctagaaattttataccaagcc
ttactccaagccaaagaagcgcggaaacatattttaaaaatcatgcatgaagcgaaagaa
aagatcgtgatcaatttttcccatttgcccacgacggagatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtggaaaagttt
gaggttaaaattgatttgaataaaccgagcggtgaagtgaaaatcatggggaataaagag
cgcgttttaaagactaaggaatttattttaaactatttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgctagaagctcaagtgaagcgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggtgaaggcttgttaagaaaacaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
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