Helicobacter pylori HPAG1: HPAG1_1191
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Entry
HPAG1_1191 CDS
T00365
Name
(GenBank) 3'-5' exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpa
Helicobacter pylori HPAG1
Pathway
hpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPAG1_1191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpa03019
]
HPAG1_1191
03016 Transfer RNA biogenesis [BR:
hpa03016
]
HPAG1_1191
Enzymes [BR:
hpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPAG1_1191
Messenger RNA biogenesis [BR:
hpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPAG1_1191
Transfer RNA biogenesis [BR:
hpa03016
]
Prokaryotic type
tRNA degradation factors
HPAG1_1191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Alpha-amylase_N
Motif
Other DBs
NCBI-ProteinID:
ABF85258
LinkDB
All DBs
Position
complement(1255331..1257265)
Genome browser
AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEALELKKDRYFLKEGFDIGRIEWAENKAFFV
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPKAFFKAALLNADHTMIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGPLEDPLIDENLSL
SLFDRVKDFSKDCLNLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLKNARLFQGVIEVRANCTYEEINHFLSTQQSSLDKDLQQSLLGFLEVALKL
KKERLKKGFNFNSFENKLYLNEEGRIEKIETQQESDAHTLIEEAMLLANQSSARLLDEHF
HNKGIYRTHKEPSLEQQKRLYAKFFDYEIVRPKNMGFFPFLEHALKIAKEKSIEREVSRL
IIKSQNLALYSPMQESHFGLGFISYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKEFIG
LKVLVKTNKVFKPLEKVRVTITHADLILGQVRGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcgcttgaattgaaaaaggatcgctatttt
ttaaaagaaggctttgatataggtaggattgaatgggcagaaaataaggcgtttttcgtt
tctttggcgaaaaattaccctaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccctaaagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttatttggctaaaaaaaatcac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaagatccttactagaattgcctaggcattgcgtggtgaagatcgatcttaaaaagcgt
gaaatcagcgaaattttagggcctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacagggttaaggatttttcaaaagattgtttgaatttagcccaacattac
gcgcaactcaaagcgagcgattttaaagacaggatcaattattctcacatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgaccaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaacattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaatagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttgaaaaacgcccgattgtttcaaggcgttatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaagcacccaacaaagc
tctttagataaagatttgcagcaaagccttttggggtttttagaggtggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcctttgaaaacaagctgtatttg
aatgaagaagggcgtatagaaaaaattgaaacgcaacaagaaagcgatgcgcacaccctt
atagaagaagccatgctcttagccaaccaatctagcgcgaggttattagatgagcatttt
cacaataaggggatataccgcacccacaaagagccaagtttggagcagcaaaaacgcctc
tatgccaagttttttgattatgagattgtgcgccctaaaaacatgggcttttttcctttt
ttagagcatgctttaaagatagccaaagaaaagagtatagaaagagaagtttcacgccta
atcattaagtctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttattagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgttccatcaagctaaaggctgctcgtatctgttagaa
gaaacgcctgagttatgcgctgagttgaacgctttacaaaaaaaggccgctttgattgaa
agggattttgtcaaacgcaagttcgctcgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaatttataggg
cttaaagttttagtcaaaacgaacaaggtttttaagcctttagaaaaagtgcgcgttaca
atcacgcatgcggatttgattttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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