Helicobacter pylori HPAG1: HPAG1_1490
Help
Entry
HPAG1_1490 CDS
T00365
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpa
Helicobacter pylori HPAG1
Pathway
hpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPAG1_1490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpa03400
]
HPAG1_1490
Enzymes [BR:
hpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPAG1_1490
DNA repair and recombination proteins [BR:
hpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPAG1_1490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABF85557
LinkDB
All DBs
Position
complement(1549770..1552769)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESKLAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEELLEIEIPPTLFSLDESSYKALKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELVSLNELDGERFKSLKVLENAQGYEDLEIHAHALEGFIALHSNRKIT
LLAPNKTILDNAISALEKSSIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPAKDRLGKGSFLKLKAKVRTKLLEIAGKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAISEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYVSEKNKLLKAVELGLMDVLVGTHAILGTKF
KNLGLVVVDEEHKFSVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISKVKTKLEELIPKLKIAI
LHSQINASESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKTDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKENLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagtctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagaatctaagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttgagggagttttatcaggccttagaaaac
aagcaagaaactatcatcattgcccctattagtgctttattgcaccctttacctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcacctaattctaaggcgtatcgcttgagt
ttttttgacaccgagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctt
aaagaagaactgttagaaattgaaatcccccccacgctttttagtttagacgaatcatct
tataaggctctgaaaaccaaagtggagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctaaagctttagaagaaattcaagaattagtgagcttaaacgaattg
gatggtgagcgtttcaaatctttaaaggttttagaaaacgcgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaggctttatcgctttgcattcaaatcgtaaaatcacg
ctcctagctcctaataaaacgattttagacaacgcgataagcgcgcttgaaaaaagcagc
attgaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatggaatttttatc
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaacgaa
ttgaatccgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccagctaaagaccggctagggaaagggagttttctcaaattaaaagctaaa
gtcaggactaagcttttagagattgcaggcaagattattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacaccagcgatcaagaaaaggctatctctgaaatttcaaaggattta
agctctcacagggtgatggatagacttttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgcgctagtcgtg
cctaccactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgtaagcgaaaaaaacaagcttttaaaggcg
gtggaattagggttaatggatgttcttgtaggcacgcatgcgattttgggcacgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttagcgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcactctctcaaattaaaggcatcagctctttaaaaaccccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attatttatagggaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagagctcatccctaagcttaaaatcgctatt
ttgcattcccagattaacgccagtgagagcgaagaaatcatgctagagtttgctaagggg
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcattattgataatgcacagaatttcgggctggctgatttgcaccaattgaga
gggcgtgtggggaggggcaaaaaagaaggcttttgctatttccttatagaagatcaaaaa
agtttgaatgaacaggccttaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agtggggagagcatcgcctatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gacgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttataccgccgtttgagtttgtgtgaaaacacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgatttgagtgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcatcaagctttctaatttcaatcaaaacatc
accatcacttatagcgatgaaaagaaagaaaacctgaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcgttaa
DBGET
integrated database retrieval system
