Glaesserella parasuis KL0318: JT17_01000
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Entry
JT17_01000 CDS
T03312
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hpak
Glaesserella parasuis KL0318
Brite
KEGG Orthology (KO) [BR:
hpak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpak03016
]
JT17_01000
Enzymes [BR:
hpak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JT17_01000
Transfer RNA biogenesis [BR:
hpak03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JT17_01000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AIK89425
LinkDB
All DBs
Position
complement(156096..158075)
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AA seq
659 aa
AA seq
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MFQNNPLLAQLKQQIEASKEYVEGVVKTSDKSYGFLECEKNSYFIPPAEMKKVMHGDKVK
AVVKRDGDKEQVEIDSLLEPMLERFIAQVRFNKDGKLQLAVDHPSINNFIPANTQKKVTE
TLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKADDNFAPWWVTLARHEQPREPVANEKS
YELQDQVDREDLTHLYFTTIDSASTKDMDDALYVEPISENGTQTGWRLVVAIADPTAYIP
EQSAIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGYIETDLSGNVVG
EARFVSAWVQSKARLVYDEVSDYLEKVENHWTPDCAETAQQIDWLHQFTLARIDWRSKNA
LLFKEQGDYSFELAEDGAVKAIHIEYRRIANQMIEEAMIIANICAAQFLDKYAHTGVFNT
HSGFDSKNLEPARKFLLDTLANDENRESLSERYSPERLSTLEGYCEMRRDIEQFPENFLE
MRLRRYLTFAEFKATSAPHLGLGISHYATWTSPIRKYGDMVNHRLIKQVLANQTAKPVEE
TVLTRLQEARKQNRMVERDIADWLYARYLAPMVEQNVEFDGEIQDVSRGGLRVKVIENGA
SVFVPFSTLHNNKEEMLFSPEEIALYIKGEKAYQIGQAVKVKLKEVRVETRSVVGDVLI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaataaccccctattagctcaattaaaacaacagattgaagcaagcaaagaa
tatgttgaaggcgttgtaaaaacgtcagataaaagttatggctttttagaatgtgagaaa
aatagctatttcattccccctgcggaaatgaaaaaagtgatgcacggcgataaggtcaaa
gctgttgtgaagcgtgatggcgataaagagcaagttgaaattgactcgttattagagcca
atgttagaacgttttatcgctcaagtgcgttttaacaaagacgggaaattgcaattagcc
gttgatcacccaagtatcaataattttattccagccaatacgcagaaaaaagtgacagaa
acccttgaaaatggcgactgggtggtggcacagttgaaaacacaccctcttcgtgatgat
cgctttttctttgctcaagtcactcaatttatctgcaaagcggacgataatttcgctccg
tggtgggtaacattagctcgccacgagcaacctcgtgaacccgttgcgaatgagaaaagc
tatgaattacaggatcaagtcgatcgagaagatctcactcacctctattttactaccatt
gacagtgccagcactaaagatatggacgatgcgttatacgttgaaccaattagcgagaac
ggcacgcaaacaggctggcgtttagtcgttgcgattgccgatccgaccgcttacattcct
gagcaatccgcgattgaaaaagcggctcgccaacgctgtttcaccaactacctccctggt
tttaacattccgatgttgccacgggagctgtctgatgatctttgctctctcgtgccgaat
gaaaaacgccctgcgttagtcggctatattgaaacagatttaagcggtaatgtggtaggt
gaagctcgctttgtgtcagcttgggttcaatctaaagctcgtttggtctatgacgaagtg
tctgattatcttgaaaaagtcgaaaatcactggacaccagactgtgcagaaaccgcacaa
caaatcgactggttgcatcaatttacccttgctcgtatcgactggcgtagcaaaaatgcc
ttgctatttaaagagcaaggcgattacagctttgagttagctgaagacggcgcagtcaaa
gcaattcacattgaatatcgccgtatcgctaaccaaatgatcgaagaggcaatgattatt
gccaacatctgtgccgcacagtttttagataaatatgcacacacaggcgtatttaatacc
cactcaggttttgatagcaaaaatctagagccagctcgtaaattcttactagataccctt
gccaatgatgaaaatcgtgaaagtttatccgaacgctactccccagagcgtttaagtacc
cttgaaggctattgcgaaatgcgtcgtgatattgagcaattccctgaaaatttcttagaa
atgcggttacgtcgctatttaacttttgctgaatttaaagcaacctcagcaccacattta
ggcttaggcatcagtcattatgcaacttggacatcgccaattcgtaaatacggcgatatg
gtcaatcatcgtttaattaaacaagtccttgcaaatcaaacagcaaaacctgtcgaagaa
accgttttaactcgcttacaggaagctcgtaagcaaaatcgtatggttgaacgtgatatt
gccgactggctctatgcccgttatcttgcgccaatggtagaacaaaacgtagaatttgac
ggcgaaattcaagatgtttctcgtggtggcttgcgtgttaaagtcattgagaatggagct
tcggtttttgttccattctcaactctgcataataacaaagaagaaatgttatttagccca
gaagagattgcactctacatcaaaggcgagaaggcttaccaaatcgggcaagcggtgaaa
gtgaaacttaaagaagttcgtgtagaaacaagatcggttgtgggtgacgttttaatctaa
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