Glaesserella parasuis KL0318: JT17_01245
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Entry
JT17_01245 CDS
T03312
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpak
Glaesserella parasuis KL0318
Pathway
hpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT17_01245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpak03019
]
JT17_01245
03016 Transfer RNA biogenesis [BR:
hpak03016
]
JT17_01245
Enzymes [BR:
hpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JT17_01245
Messenger RNA biogenesis [BR:
hpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JT17_01245
Transfer RNA biogenesis [BR:
hpak03016
]
Prokaryotic type
tRNA degradation factors
JT17_01245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
aRib
S1_2
OB_PDCD11
Motif
Other DBs
NCBI-ProteinID:
AIK89462
LinkDB
All DBs
Position
214392..216521
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AA seq
709 aa
AA seq
DB search
MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTV
DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN
PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAG
TDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTD
LINKVKALAEARLGDAYRITEKQARYEQIDAIKADAIAQLTAEDETISSGKIVDIITALE
SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERD
AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF
PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI
LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAI
PAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATD
NNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVER
VADYLSVGQDVQVKVVEIERQGRIRLTMKDLNGDATAREVVEEIQELAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgactccaatcgttaaacaatttaaatacggtcagcataccgtaactttagaaacaggg
gctattgctcgtcaagcaacagcagcagtaatggcaagtatggacgatacgacggttttt
gttaccgttgtggcaaaaaaagaggtgaatgaaggccaagacttcttcccattaactgta
gattatcaagagcgtacttacgcagcaggccgcattccaggtggtttcttcaaacgtgaa
ggtcgtccatctgagggtgaaactttaattgctcgtttaatcgaccgcccagttcgccca
cttttccctgaaggtttcttcaacgaaattcaagtgattgcaacggtggtttctgtcaat
ccacaaatcagcccggatttagtggcgatgatcggtgcttcagctgcattatctttatcc
ggcgtgcctttcaacggcccaatcggtgcagcacgtgttggttttattgataaccaattc
gtcctaaacccaactacatcagaacagcgtttaagccgtttagatttagtggtagctggt
acagacaaagcggtattaatggttgaatctgaagcagatatcttaactgaagaacagatg
ttagccgcagtggtgtttggtcacgaacagcaacaagtggtgattgaaaacatcaaagaa
tttgtgaaagaagcgggcaaaccacgttgggattgggttgctccagagccaaatacagat
ttaatcaataaagttaaagcattagcagaagctcgtctgggcgatgcttaccgtattact
gaaaaacaagcacgttatgaacaaattgacgcaatcaaagctgatgctatcgctcaatta
accgcagaagatgaaaccatttcaagcggcaagattgtagatattattaccgcattagaa
agccaaatcgtgcgtagccgtattatcgcaggcgaaccgcgtattgacggtcgtacagtg
gataccgtgcgtgcattagatatttgcactggcgttttaccacgtactcacggttcagca
ttgtttacccgtggtgaaacacaggcgttagcagttgcgacattaggtacagagcgtgat
gcacaaatcattgacgaattaacaggcgaaaaatcagatcgcttcttattccactacaac
ttccctccatattcagtaggtgaaacaggtcgtatcggttcgccgaaacgtcgtgaaatc
ggtcacggtcgtttagcgaaacgtggtgtgttagcagtaatgccaacggcagaagaattc
ccttatgttgtgcgtgtggtatctgaaattaccgagtcaaacggttcttcatcaatggct
tctgtatgtggtgcttctcttgcgttaatggacgctggtgtgccaattaaagcagctgtt
gcaggtatcgcaatgggcttagtgaaagaagaagagaaatttgtggtactttcagacatt
ttaggtgatgaagaccacttaggcgatatggactttaaagtagcgggtacccgtgaaggt
gtaactgcattacaaatggacatcaaaattgaagggatcacccctgaaattatgcgtatc
gcattaaatcaagcgaaaggtgcgcgtatgcacattttaggcgtaatggaacaagcgatc
cctgcaccacgttcagaaatttctgacttcgcacctcgtattcatacaatgaagatcgat
ccgaagaaaatcaaagatgtgatcggtaaaggtggtgcgacaattcgtgcattaaccgaa
gaaactggcacatcaatcgacattgatgatgacggaacagtgaaaattgcggcaacagac
aacaacgccgcgaaacgtgtgatggaacgtatcgaagagatcgttgcagaagttgaagtc
aatgcgatctacaaaggtaaagtaacccgtgtagtagatttcggtgcattcgtgtctatc
cttggtggtaaagaaggtttagtgcatatttctcaaatcactgacgctcgtgtagaacgt
gttgcggattacctatctgttggtcaagacgttcaggtgaaagtggtagaaatcgagcgt
caaggccgtatccgcttaacaatgaaagatctgaatggtgatgcaactgctagggaagtt
gttgaagaaattcaagaattagcagaataa
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