Glaesserella parasuis KL0318: JT17_06635
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Entry
JT17_06635 CDS
T03312
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hpak
Glaesserella parasuis KL0318
Brite
KEGG Orthology (KO) [BR:
hpak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpak03019
]
JT17_06635
Enzymes [BR:
hpak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JT17_06635
Messenger RNA biogenesis [BR:
hpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JT17_06635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND3
T2SSE
ResIII
SLFN-g3_helicase
nSTAND_NTPase5
NACHT
AAA_23
ABC_tran
RsgA_GTPase
SRP54
AAA_25
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIK90407
LinkDB
All DBs
Position
complement(1313694..1317632)
Genome browser
AA seq
1312 aa
AA seq
DB search
MQKNHKNQPLTAEQKNLLNQLQDTTLIDARRLARRIRGLANIKNENAKQAIIAEIEVDLT
ACKSRYLTRKQQAEQLKIEYPDLPVSARRDEILKLIAEHQVVVIAGETGSGKTTQLPKMC
LELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGSTIGYKIRFNDQISDNTLVKLMT
DGILLAEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKHPDLKVIITSATIDV
ERFSKHFNNAPIIEVSGRTYPVEVRYRPIVEEDDQDQLQGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQELRHTEILPLYARLSAAEQQRIFNPSNLNRIILATNVAETSLTI
PNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICIRLYSEEDF
NARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRHIQDGIRLLEELGALGR
DALRVSADARSASLQKLTNIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMIVSALSIQD
PRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQEQQKELTKNQFRRLCQKDYLNYL
RVREWQDIYHQLRLAVREMGLPINSEPANYQQIHTALLSGLLSHIGLKDNEKMHYLGARN
AHFYLFPNSVLFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAKHLTKSSYSEPRW
AKSKGAVVADEKVSLYGIPIIASRPVMYGAIDPVVSREIFIRSALVEGEWHNNYKFFKEN
NRLIKEIEELEHKSRRRDILVDEQVLLEFYDQRIGTDVVSSKHFDSWWKKASQKDPELLN
FEKSFLMNDNANKVSELDFPNFWYQGSLKLKLIYQFEIGSQADGVTVHIPLPLLNQVDTH
GFDWHVPGLRQELIIALIKSLPKAIRRSFVPAPNYAEAFLSRAEPFKKPLLESLSYELRR
MTGVLVEPEQWDLNQLPPHLRISFRVIDEKGKSLAESENLDELKFNLKDEVQNTLSNIAD
DGIEQSGVHLWNFADLPQFYEQKKQHFSVKAYPAIVDEKDAVGIKLFETEFEQAKAMQAG
LRRLLLLNVPSPIKYLHEKLPNKTKLGLYFAPFGKVLELIDDCIACAVDKLMEEFGGFVW
SEEKFNALHDYVRANLNDTTVEIAKQVEKNLTLAYEINKRLKGKLDFTMAFALSDIKAQI
DGLIYPDFVTKTGYKRLADLHRYLTAIDKRLDKLVVDSNADRSKMLRVEQVQNAYQQLLA
KLPKSKPISDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRILNSIHQIIKF
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaaccataaaaaccaaccgcttacagcagaacaaaaaaacttacttaaccaa
ctgcaagataccactttaattgatgctcgccgtttagccaggcgtattcgtgggttggcg
aatatcaaaaatgaaaacgctaaacaagccatcattgcagaaattgaggtggatttgacc
gcttgtaaaagtcgctatctcacgcgtaaacaacaagccgaacaactgaaaattgagtac
cctgatctgcctgtttccgctcgccgtgacgagatcttaaaactgattgccgaacatcaa
gtggtggtgattgctggggaaacggggtcgggtaaaactacgcagttgccaaaaatgtgt
ttggaactagggcgtggggtgaaaggactaatcgggcatacgcaacctagacgtatcgcg
gctcgctcggtggcgacacgcattgcagaagaattgaagtcagaacttggttcaaccatc
ggttataaaatccgctttaacgatcagattagcgataacaccctcgtcaaattgatgacg
gacggtattctgcttgccgaaatccaaaacgaccgctatctcaatcaatacgatacgcta
attattgacgaagcccacgaacgttcgcttaacaatgattttattctcggctatctcaaa
caaattttagcaaaacaccctgatttgaaggtgatcatcacatcggcaaccattgatgtg
gaacgtttttctaaacatttcaacaacgcaccaattattgaagtatcaggcagaacttat
cctgtggaagtgcgttatcgcccgattgtggaagaagatgatcaagaccaactgcaaggc
attctcaatgcggtggacgaactgcaagcagaaggtcggggcgatattttgatttttatg
aacggcgagcgagaaattcgtgatactgccgaagccttgcagaagcaggaacttcgccat
acggaaattttaccgttatatgcccgtttatctgccgcagaacagcaacgcatttttaat
ccaagtaatctaaaccgcattattctcgcgactaacgtggcggaaacctcgctgactatc
ccaaatatcaaatatgtgattgatacaggaacggctcgcatttcccgttatagctatcgt
accaaagttcagcgtttgccgattgagccgatttctcaagcctccgccaaccagcgtaaa
gggcgttgcgggcgtatttcggaagggatatgtatccgcttgtattcggaagaggatttt
aacgcccgtccgcagtttaccgatcctgaaattttgcggacaaatttggcttcggttatc
ttgcagatgacggcgttgggtttgacggatattgcttcgtttccgtttgtagatgcgcca
gatcaacggcatattcaagatggtattcgtcttttagaagaattaggtgctttgggtagg
gacgcactgcgtgtgtccgcggacgcacgcagtgcgtccctacagaaattaacaaacatc
ggtcgccaactcgcccaactgcctatcgatccccgtctaggtcgtatggtgatcgaagcg
gctaaaaacggcagtttgcacgaagtgatgatgatcgtatcggcgttatctattcaagat
cctcgtgaacgtccgcaggaaaaacagcaatcggcagatgataaacatcgccgttttgcc
gacaaagagagcgattttttagcctttgtgaacctgtggcattttattcaagagcaacaa
aaggaactcaccaaaaatcagttccgtaggctctgccaaaaagattatctcaactatctg
cgagtgcgtgagtggcaggatatttatcatcagcttcgccttgcggtgcgtgaaatgggc
ttgccgattaacagtgaacctgcaaattatcagcaaattcataccgctttattatcgggt
ttattgtcgcatatcggcttgaaagacaacgaaaaaatgcactatttaggggcaagaaat
gcacatttttatctgttccctaattccgtgcttttcaaaaaacagccgaaatgggtaatg
gcggcagaattggttgaaaccactaaattgtgggggcgaatggtggcacgaattgagcct
gaatgggttgaaccgcttgccaaacacttaaccaaatccagctacagcgaaccacgttgg
gcgaaatcaaaaggggcggtggttgccgatgaaaaagtctcgctctacggtattccgatt
atcgccagccgtcctgtgatgtatggggcaatcgatcctgttgtcagccgtgaaattttt
atccgctcagcgttggtggaaggtgaatggcacaataattacaaatttttcaaagaaaat
aaccgcttgatcaaagagatcgaagagttggaacataaatctcgccgtcgagatatttta
gtggacgagcaagtgctgcttgaattttacgatcagcggatcggcacagatgtcgtttcc
agcaaacattttgacagctggtggaaaaaagcgtcacagaaagatcctgaactgctgaac
tttgaaaaatcgttcttgatgaatgataatgcaaacaaagtcagcgaattagacttccca
aatttctggtatcaaggttcgcttaagttgaagctgatctatcaatttgaaatcggctcg
caagcggacggcgtgacggtacatattccgttaccgttgctgaaccaagtggatacgcac
ggctttgattggcacgttccaggactacgtcaagagcttatcattgcattgattaaatcg
ctaccgaaagctattcgccgtagttttgtacccgcaccaaactatgcggaagcgttttta
tctcgtgcagagccgtttaaaaaaccattgttggaaagtttgagttatgaacttcgccga
atgacaggggttttagttgagcctgaacagtgggatttaaaccaactgccaccgcatttg
cggatcagcttccgtgtgattgatgaaaaaggtaaaagccttgcggaaagtgaaaatctt
gatgagctaaaatttaacttgaaagacgaagtgcaaaatactctgtctaacattgccgat
gacggcattgagcaaagcggtgtgcatttgtggaattttgccgatttgccacaattttac
gagcagaaaaaacagcattttagcgtaaaagcctaccctgcgattgtcgatgaaaaagat
gccgttgggatcaagctgtttgaaacggaatttgagcaagccaaagcaatgcaagcaggc
ttacgccgattgttattgctaaacgtgccgtcgccgattaaatatctgcacgaaaaactg
ccgaataaaaccaaacttggtttatattttgctccgttcggcaaggtgctagaactgatt
gacgactgtatcgcctgtgcggtggataagttgatggaggagtttggtggctttgtgtgg
tcggaagaaaaatttaacgccctgcacgactacgttagggcgaatttaaacgacaccacg
gtcgaaattgctaaacaggttgagaaaaatcttacccttgcctatgaaatcaacaaacgt
ctaaaaggtaagctggatttcacgatggcatttgccctgtcagacattaaagcacaaatt
gacggtttgatttaccccgattttgtcaccaaaacgggctacaaacgccttgcagattta
caccgctatctcaccgctatcgacaagcggttagataagttggtggtggatagcaatgct
gaccgatccaaaatgttgcgagtggaacaggtgcaaaacgcctatcaacaactgttggcg
aaactgccaaaatccaaaccgatttccgatgaagtcttagaaattcgttatatgattgaa
gagttgcgtgtcagcctgtttgcccaacagcttggcaccaaatatccgatttcggataag
cggattttgaatagtattcaccaaataataaaattttga
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