Glaesserella parasuis KL0318: JT17_07035
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Entry
JT17_07035 CDS
T03312
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpak
Glaesserella parasuis KL0318
Pathway
hpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT17_07035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpak03019
]
JT17_07035
03016 Transfer RNA biogenesis [BR:
hpak03016
]
JT17_07035
Enzymes [BR:
hpak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JT17_07035
Messenger RNA biogenesis [BR:
hpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JT17_07035
Transfer RNA biogenesis [BR:
hpak03016
]
Prokaryotic type
tRNA degradation factors
JT17_07035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
UPF0158
Motif
Other DBs
NCBI-ProteinID:
AIK90480
LinkDB
All DBs
Position
complement(1394125..1396431)
Genome browser
AA seq
768 aa
AA seq
DB search
MIVDPNYQKELEKYENPVPSREFILQTIRDYDAPMSREELLEAFHLYDEERQEAVRRRLR
AMENDGQLVFTKKKRYALPEKMDLIKGTVIGHRDGYGFLQVEGDDDWFIPNSQMIRVMHG
DFVLAQPNGIDRRGRKEVRIVRVLEARKKQIVGRFFTESGINYVVPDDSRINQDILIPEE
HRLGARMGQVVVVELQPRKADFKRPVGVITEILGDNLAPGMEIEIALRNHDIPHVWPEGV
EKQVRQFNEEVPDEAKIGRVDLRDLPLVTIDGESARDFDDAVFCQKESNGWRLWVAIADV
SYYVRPKTALDLEAQQRGNSVYFPNRVIPMLPEVLSNGLCSLNPQVDRLCLVAEMAVSES
GKLLGYKFYEAVMNSHARLTYTKVWNILEGDEALRERYFYLVPHLEELHAMYKVLLNTRH
QRGAIEFETVENQFIFNPQGRIERIEPVIRNDAHKIIEECMILANIASARFVEEANEAAL
FRIHAQPSEEKLTSFRTFLKECGLCLNGGLRPTPKDYAELLEQVKERPDAELIQTMLLRS
LKQAVYSPDNEGHFGLALTEYAHFTSPIRRYPDLLLHRAIKYLIEKEKGNKRHYTDGGGY
HYQIDDMDIFGEKCSATERRADEATREVADWLKCEYMQDHIGEVFDGVISSVTGFGLFVK
LNELLIDGLVHISTLDNGYYHFDSDRQRLVGENGVMYRLGDPVRVKVIGVNLDDKKIDFV
LMTSLRKARGEGKTAKKKAKAEKPVFKEVKIKNARTKSINKKSSKSKY
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgatcgttgatccaaattaccaaaaagaactcgagaaatatgagaaccctgtgccgagc
agggaatttattttacaaaccattcgtgactatgacgctccgatgagcagagaagagttg
cttgaagcgtttcatctttatgatgaagaacgtcaagaagcggtgcgtcgtcgtttgcgt
gcgatggaaaatgatgggcagttagtctttactaagaaaaaacgttatgccttacctgaa
aaaatggacttaatcaaaggcacggtgattggacaccgtgatggctacggctttttgcaa
gttgaaggcgatgatgactggtttatcccgaatagtcagatgatccgtgtgatgcacggt
gattttgtgctggctcaaccgaatggaattgaccgtcgtgggcgtaaagaagtacggatt
gtacgtgtgcttgaagcacgcaaaaagcagattgttggacgttttttcactgagagcggt
atcaattatgtggtgcctgatgatagtcgtatcaatcaggatattttgatccctgaagaa
catcgtctaggggcgagaatggggcaagtggttgtggttgaacttcagccacgcaaagca
gatttcaaacgccctgttggtgtgattacggaaattctaggggataatcttgcaccaggt
atggaaatcgaaattgctctgcgtaaccacgatattccgcacgtttggccagaaggtgtg
gaaaaacaggtgcgtcaatttaacgaagaagtgcctgacgaagcaaaaataggtcgggtc
gatctgcgtgacttaccgttggtgacgattgatggcgaaagtgcgagggattttgatgat
gcggtgttttgtcaaaaagagagcaacggctggcgtttgtgggtggcgattgcagatgtg
agttactatgttcgcccgaaaactgcccttgatcttgaagctcaacagcgtggtaattcg
gtctatttccctaatcgtgtgatcccgatgttacctgaagtgctatcaaatgggttatgt
tcattaaatccgcaagtagatcggctctgcttagtggcagaaatggcggtgtctgaaagc
ggtaagttactgggctataaattctatgaagcggtaatgaactcgcacgctcgcttaact
tatacgaaagtgtggaacattttagaaggcgacgaagcacttcgtgagcgttatttctat
cttgtgccacatttggaagagttgcacgcaatgtataaggtgttgctgaatactcgtcac
caacgtggtgcgattgagtttgaaacggtcgaaaatcaatttattttcaatccgcaaggg
cgaattgaacggattgagcctgtgatccgcaatgatgcacataaaatcattgaagagtgt
atgattttagccaacattgcttctgctcgttttgtggaagaagcaaatgaagcagcctta
ttccgtattcacgctcaaccgagtgaagaaaagctcaccagtttccgtactttcttgaaa
gagtgcggtttatgcttaaatggcggtttgcgtccaacgcctaaagattacgccgaattg
ctggaacaggtcaaagaacgccctgatgccgaattaattcagacaatgttacttcgctca
ctcaaacaagcggtctattcccctgataatgaaggacattttggcttggcattgacggaa
tatgcccatttcacttctccgatccgccgttatcctgatttgttattacatcgtgctatt
aagtatttgattgaaaaggaaaaaggcaacaagcgtcactataccgatggcggtggctat
cactatcagatcgacgatatggatattttcggtgaaaaatgttctgcaacggaacgtcga
gcagatgaagctacacgagaagttgctgattggctgaaatgtgaatatatgcaagatcat
atcggcgaagtgtttgatggtgtgatttccagcgtaacgggttttggcttgttcgtaaaa
ctcaacgaactgctgatcgacggtttagtccacatttcaaccttagataacggctattac
catttcgacagcgaccgccagcgtcttgtcggcgaaaacggcgtaatgtaccgcttgggc
gatcctgttagagttaaagtgatcggggtaaatcttgatgataaaaaaattgattttgtt
ttaatgaccagcttacgcaaagctcgtggtgaaggcaaaacggcgaagaaaaaagcgaaa
gcggaaaagccagtgttcaaggaagttaagataaaaaatgcgagaaccaagtccataaat
aaaaaatcgagtaaaagtaagtattga
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