Glaesserella parasuis KL0318: JT17_09385
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Entry
JT17_09385 CDS
T03312
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hpak
Glaesserella parasuis KL0318
Pathway
hpak03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JT17_09385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpak03400
]
JT17_09385
Enzymes [BR:
hpak01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JT17_09385
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JT17_09385
DNA repair and recombination proteins [BR:
hpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JT17_09385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_ACC
Zn_ribbon_8
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AIK90872
UniProt:
A0A859IHJ2
LinkDB
All DBs
Position
complement(1863823..1864647)
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AA seq
274 aa
AA seq
DB search
MPELPEVETSMRGISPYLVGQKIKEIIVRQPKLRWAVSSELSTMQGATIIEIYRRAKYLI
IQTDKGDILVHLGMSGSLGILSVKENKAIDKHDHIDLITENGVILRYNDPRKFGTWLWAE
QAETAELLANLGPEPLSEAFTSGYLFEKSRNKTVAVKNFIMNNAIVVGVGNIYACESLFM
AGIHPELAAQNLTAKQCERLVTVIKEVLTKAIIQGGTTLKDFIQPDGKPGYFAQVLQVYG
RKGEECNDCGSIIEAKVIGQRNSFYCPKCQRLPK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacccgaagtcgaaacaagtatgagaggcatctcgccttaccttgtaggg
cagaagatcaaagagattattgttcgtcagccgaaattacgttgggctgtgagttcagag
ctttcaactatgcaaggggcgacgataattgagatttaccgccgagctaagtatttaatt
attcagacagataagggcgatattttagttcatttaggaatgtcgggatcgttgggtatt
ttatcggtcaaagagaataaggcgatagataagcacgatcatatcgatctcatcacagaa
aacggcgtaatcttacgttataacgacccacgaaaatttggaacctggctttgggcagag
caagctgaaacagcagagttattagcaaatttagggccagagcctctttcagaagccttt
acaagcggttatttatttgaaaaaagtcgcaataaaacggttgctgtgaaaaacttcatt
atgaataacgctatcgttgttggtgtgggcaacatctatgcttgcgaatcactttttatg
gctggaatccaccccgaattagccgcacaaaatctaaccgcgaaacagtgtgagagatta
gtcactgtgattaaagaggttttgacaaaagcgattatccaagggggaacgaccttgaaa
gattttattcagcctgacggaaaacctggatatttcgcccaagtattacaagtctatggt
cgcaaaggcgaggaatgtaacgattgtggctctattattgaagctaaggtaatcgggcaa
cgaaatagtttctattgtccaaagtgtcagagattaccgaagtaa
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