Hafnia paralvei: AL518_01950
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Entry
AL518_01950 CDS
T05667
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpar
Hafnia paralvei
Pathway
hpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL518_01950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpar03019
]
AL518_01950
03009 Ribosome biogenesis [BR:
hpar03009
]
AL518_01950
Enzymes [BR:
hpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL518_01950
Messenger RNA biogenesis [BR:
hpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL518_01950
Ribosome biogenesis [BR:
hpar03009
]
Prokaryotic type
rRNA helicases
AL518_01950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
LisH_WDR26
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMH16911
UniProt:
A0A4Q9ET04
LinkDB
All DBs
Position
complement(432766..434676)
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AA seq
636 aa
AA seq
DB search
MAEFETSFADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLHNIDPSLKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQ
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKLTIPEVEIPNAELLGQRRLAKFAAKVQQQLESSDLDKYRDLLTKLQPEDELDMET
LAAALLKMAQGERPLILPPDPVMERRPRREFRDRDDRNERGGDRFARRGDREPREAREGA
PRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK
GMPGDLLSHFTRTRILNKPLNMQLMGDAPAREPRRERPAGDRGGRSAGGERRSFGGRDGA
PRRDDRRGNSDRSAAPRGPRRDDAAQPPRRRTTNDA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcgaaacttcttttgctgacctagggttagctgcaccaattatccaagcc
ctgaccgatctgggctatgaaaaaccgtctccaatccaggcggaatgtattcctcacctt
ttaaatggccgtgacgttctgggtatggctcagaccggttccggtaagactgcagcgttt
tctttgccgctgctgcacaatattgacccaagcctgaaagcaccacaggtgctggttcta
gctccaactcgtgagctggcggttcaggtttctgaagcgatggctgacttcgctaaacac
atgaacggcgtaaacgttgttgctctgtacggtggccaacgctacgacgtacagctgcgt
gctttgcgtcagggaccacagattgttgtgggtactcctggtcgtctgctagaccacctg
aagcgtggcaccctgaacctgtctaacctgagtggtttggttctggacgaagctgacgaa
atgttgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatccctgcacag
catcagactgcgctgttctctgcaactatgcctgaagccattcgtcgtattacccgtcgc
ttcatgaaagagcctcaggaagtacgcattcagtctagcattacgactcgcccagacatt
agccagagctactggactgtgttcgggatgcgtaaaaacgaagcgctggttcgattcctt
gaagctgaagattttgatgctgcaatcatcttcgtacgtaccaaaaatgcgactctggaa
gttgctgaagcattggaacgtagtggttacagcagcgccgctctgaacggtgatatgaat
caggcgctgcgtgagcagactctagaacgtttgaaggatggtcgcttagatatcctgatt
gcaactgatgttgctgcacgtggtctggacgtggaccgtatcagtctggttgttaactat
gacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgctggc
cgcgctggtcgtgcgttgctgttcgttgagaaccgtgaacgtcgcctgttgcgtaacatt
gaacgcatcatgaagctgaccattccagaagttgaaatccctaacgcagaactgctgggt
caacgtcgtctggctaagtttgccgctaaagttcagcagcaactggaaagcagcgatctg
gataaataccgcgatctgctgactaaactgcagccggaagatgaactggatatggaaact
ctggccgcagcactgctgaaaatggcacagggcgaacgtccgctgatcctgccacctgat
ccggttatggaacgccgtccacgtcgtgaattccgcgaccgtgacgatcgcaatgaacgc
ggtggcgatcgcttcgctcgtcgtggtgaccgtgagccacgtgaagcccgtgaaggcgcc
ccacgtcgtgaacgccgtgatgctggcgatatggaactgtaccgtatcgaagtgggtcgt
gatgatggtgttgaagttcgtcacatcgttggtgctatcgctaacgaaggtgatattagc
agccgttacataggtaacatcaagctgtttgcttctcactcaacgatcgagctgccaaaa
ggtatgccaggtgatctgctgtctcacttcacccgtacccgtatcctcaataagccgctg
aatatgcagctgatgggtgatgctccagcacgtgaacctcgtcgcgaacgtcctgcaggc
gatcgcggtggccgtagtgccggtggcgagcgtcgcagcttcggtggacgtgatggcgca
cctcgtcgtgacgaccgtcgcggtaacagcgatcgtagcgcagcaccgcgcggcccacgc
cgtgatgatgcagcacagccgccacgtcgtcgtactactaacgacgcgtaa
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