Hafnia paralvei: AL518_01960
Help
Entry
AL518_01960 CDS
T05667
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpar
Hafnia paralvei
Pathway
hpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL518_01960 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpar03019
]
AL518_01960 (pnp)
03016 Transfer RNA biogenesis [BR:
hpar03016
]
AL518_01960 (pnp)
Enzymes [BR:
hpar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AL518_01960 (pnp)
Messenger RNA biogenesis [BR:
hpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AL518_01960 (pnp)
Transfer RNA biogenesis [BR:
hpar03016
]
Prokaryotic type
tRNA degradation factors
AL518_01960 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_PDCD11
OB_RRP5_4th
S1_2
KH_2
S1_RRP5
aRib
KH-I_KHDC4-BBP
DUF4172
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AMH16913
LinkDB
All DBs
Position
complement(435856..437970)
Genome browser
AA seq
704 aa
AA seq
DB search
MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA
GTEGAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNE
ALHARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAALQAEDESLNAGEIADVLGSL
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAAT
DNEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEASAPEQAAAPAAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatcctatcgttcgcaaattccagtacggtcagaataccgtaactctggaaact
ggcatgatggctcgccaagccactgctgctgtcatggttaccatggacgacaccgcggta
ttcgttaccgttgttggcgctaaaaaagctaaagaaggccagagcttcttccctctgacc
gttaactatcaggagcgtacctacgctgctggtcgtttcccaggtggcttcttccgccgt
gaaggccgtcctggtgaaggcgaaactctgattgcgcgtctgattgaccgcccaattcgt
ccactgttcccagaaggcttcctgaacgaagttcaggttgtcgctaccgttgtttccgta
aacccgcaggttagcccagacatcgttgcgatgatcggtgcttctgctgccctgagcctg
tccggtattccgttcaatggcccaatcggcgcagctcgcgttggttacatcaacgaccag
tatgtgctgaacccaacgaccgatgagctgcaagaaagcaagctggatctggttgttgca
ggtaccgaaggcgcagtgctgatggttgaatccgaagctcagttgctgagcgaagaccag
atgctgggtgccgttgtattcggtcacgaacagcagcaggttgttattgaaaacatcaag
gcgctggctgcagaagcgggcaaacctcgttgggaatggactgcacctgcggttaacgaa
gccctgcatgctcgtgttgcagcactggcggaagctcgtatcggtgatgcatatcacatc
actgaaaaacaggctcgctacgctcagattgaccagattaaagctgacgttatcgctgcc
ctgcaggctgaagacgaatctctgaacgcgggcgaaatcgcagacgttctgggttcactg
gagaaaaatgtcgtacgtagccgtgtgctgcgtggcgagccacgtatcgatggccgtgaa
aaagacatgatccgtggccttgatgtgcgtaccggtgtcctgccgcgtacccacggttct
gcactgttcacccgtggtgaaactcaggctctggtgaccgcaactctgggtacagaacgt
gatgctcagaacattgatggtttaactggcgagcagactgaccgcttcctgctacactat
aacttccctccgtattccgtaggggaaaccggcatgatgggttcacctaagcgtcgtgaa
attggtcacggtcgtttggcgaagcgcggcgtgttggctgtaatgcctaagcaagacgaa
ttcccgtacactgttcgtgtggtttctgaaatcaccgaatctaacggttcttcttcaatg
gcttccgtttgtggtgcttctttagcactgatggacgcaggtgttccgatcaaagctgcc
gttgccggtatcgcgatgggtctggttaaagaagacgaaaacttcgtcgtactgtctgac
attctgggtgacgaagatcatctgggcgacatggacttcaaagttgcgggtagccgcgaa
ggtatcactgctctgcagatggatattaagattgaaggcatcacccgcgaaattatgcag
gtggccctgaatcaggctaagggtgcacgtttgcacattctgggtgtgatggaacaggcg
atcaatgcgccacgtggtgatatctctgaattcgctccacgtatccataccatcaagatc
aatcctgagaagatcaaagatgttatcggtaagggcggttccgttattcgtgcactgact
gacgaaacgggtactaccattgaaatcgaagatgacggtactgttaaaattgcagcaacc
gacaacgaaaaagcgaaacatgctattcgtcgtatcgaagaaatcactgctgaaatcgaa
gttggccgtatctatcagggtaaagtaacccgtatcgttgatttcggtgcattcgttgct
atcggtggcggtaaagaaggtctggtgcatatttctcagatcgctgacaagcgcgttgag
aaagtgaccgactatctgcagatgggtcaggaagttcctgttaaggtactggaagttgac
cgtcagggtcgcgtccgcttgagtattaaagaagcaagcgcgccagaacaggctgctgct
ccagctgctgaataa
DBGET
integrated database retrieval system
