Hafnia paralvei: AL518_03920
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Entry
AL518_03920 CDS
T05667
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hpar
Hafnia paralvei
Pathway
hpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL518_03920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpar03019
]
AL518_03920
Enzymes [BR:
hpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL518_03920
Messenger RNA biogenesis [BR:
hpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL518_03920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
SwaI-like
Motif
Other DBs
NCBI-ProteinID:
AMH17246
UniProt:
A0A2A2M8A0
LinkDB
All DBs
Position
866780..868069
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFADFALHPTVVKALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPVAENRKTNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQGHIDLGCIQVVVLDEADRMFDLGFIKDIR
WLFRRMPATNQRLNMMFSATLSYRVRELAFEHMNNAEYIEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSITLA
CEEYVLNLPAIEAYIEHSIPVSKYNSEALLTDLPAPKRLTRPRSNNGQRRSSGPRRNNGS
MRQSRKRTS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttcgccgacttcgccctgcacccaacggtg
gtcaaagcccttgaatctaaaggctttcataactgcacgcctattcaggcactcgcatta
cccctgacagtgaatgggcgtgatgtagcaggtcaggcacaaacaggcaccggcaagacg
ctggcttttttagcgtcaactttccattatttactcactcatcctgtcgcagagaaccgt
aaaaccaatcagccaagagcgctgattatggctccgacacgtgaattagccgttcaaatt
cactctgatgccgaggcacttgcgcacgaaacaggtctgaaacttggtttggcatacggt
ggcgatggctacgataaacagctgaaagtgctcgaaagtggtgttgatattctgattggc
actacgggtcgcttgatcgactatgctaaacaaggccatattgacctcggctgtattcag
gttgtggttcttgatgaagccgaccgcatgttcgacttaggctttattaaagatatccgc
tggctattccgtcggatgcctgcgaccaatcagcgcctaaatatgatgttctccgctaca
ttatcttatcgtgtacgcgaactggccttcgaacatatgaacaacgctgaatatattgaa
gtggaaccagaacaaaaaacgggtcatcgcattaaagaagagctgttctacccttctaac
gaagaaaaaatgcgtttattacagacgctgatcgaagaagagtggccagatcgctgcatt
atttttgccaataccaagcaccgctgcgaagatatctggggccatttagccgcagacgga
catcgtgtaggcctgctgaccggcgatgtggctcagaaaaaacgtctgcgtattctggat
gacttcaccaaaggcaatctggatatcttagtggcaaccgacgtcgcagcccgtggatta
catatcccactagtgactcacgtattcaactacgacttacctgacgattgtgaagactac
gttcaccgtatcggccgaactgggcgtgcaggtgaaagtggctattccatcacactagct
tgtgaagaatatgtactcaatctgccggcaattgaggcctatatcgagcactcaatcccc
gtaagtaagtacaacagcgaagcgctgctcactgatttacctgcaccgaagcgattaact
cgccctcggagtaacaacggccaacgccgtagttcaggtccgcgccgtaataacggttcg
atgcgtcaaagccgtaaacgtacgagttaa
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