Hafnia paralvei: AL518_13685
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Entry
AL518_13685 CDS
T05667
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hpar
Hafnia paralvei
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpar03016
]
AL518_13685
Enzymes [BR:
hpar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AL518_13685
Transfer RNA biogenesis [BR:
hpar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AL518_13685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AMH18962
LinkDB
All DBs
Position
complement(3080738..3082678)
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AA seq
646 aa
AA seq
DB search
MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEVDAQKSYFIPPPYMKKVMHGDRV
LAAVHTEKDREVVEPEELVEPFLTRFVGRVQKKDGDNRLSIIPDHPLLKDAIPCRADNSV
THEFKQGDWVVAEMNRHPLKGDRTFFANITTYITDGGDDFAPWWVTLARHGLDRSAPEWS
GSEMHEEGLQREDLTALPFVTIDSASTEDMDDALYVQETEDGSLALTIAIADPTAYVEQG
SELDKIAQVRAFTTYLPGFNIPMLPRDLSDDLCSLRANERRPALLCRVTVAQDGAISDDI
RFFAGWIESKAKLVYDEVSDYLEGVGSWKPENAQIEQQVRLLHRLADSRSSWRQQHALVF
KDRPDYRFVLGEKGSVVDIIAEHRRVANRIVEECMITANVCAAIVLRDRLGFGVYNTHSG
FDPALVEQAVSILQANDVAANAEALLTLQGFCELRRHLDSLPTTFLDSRVRRFQTFAEIS
TEPGPHYGLGLEAYATWTSPIRKYGDMVNHRLLKALIADKPAQRPDESITVQMAERRRLN
RMAERDVGDWLYARFLKDKVDPAIHFNAEIIDISRGGMRVRLVDNGAIAFIPSSFIHAVR
DELVCSQETGSLQIKGETVYQTGDNLQVYLTEVRMETRSIIAKPVA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataacccgctgctcgcacagcttaaacagcaactgcattcccagactcca
cgcgttgaaggcgtcgtaaaagggaccgacaaaggctttggcttcttggaagttgacgct
cagaaaagctatttcattccgcctccgtacatgaaaaaagtcatgcacggtgaccgcgtt
ctggctgctgttcacactgagaaagatcgtgaagtcgttgagccggaagagttggttgaa
ccttttctgactcgcttcgttggtcgtgtgcagaaaaaagacggtgacaaccgactgtcc
attattcctgatcatccgttactcaaagatgccatcccctgcagggctgacaactcggtg
acgcatgaatttaagcaaggcgactgggtcgttgctgaaatgaatcgccatccactgaaa
ggcgatcgtaccttctttgccaacatcaccacctacatcaccgacggtggcgatgatttc
gcgccgtggtgggtgactctcgcgcgccacggtctggatcgcagtgcacctgaatggtct
ggcagtgaaatgcacgaagaaggtttacagcgcgaagacctcaccgcactgccgttcgtc
accatcgatagcgccagcacggaagatatggatgatgcgctgtatgtgcaggagactgaa
gatggttctctggcgctaacgatcgctatcgccgatccaacggcttatgtcgagcaaggt
tccgagctggacaaaatcgctcaggtacgtgcatttaccacttacctgcccggctttaat
atccctatgttaccgcgcgatctgtcagatgacctgtgctcattgcgcgccaacgaacgt
cgtccagcgttgctgtgccgtgtaaccgtagcgcaagacggtgcgatctctgacgatatc
cgcttctttgctggctggattgagtctaaagcgaaactggtctatgacgaagtttcagac
tatctggaaggagttggtagctggaaacccgagaacgcgcagattgagcagcaggtgcgt
ttgctgcatcgtttagctgactcgcgctcaagctggcgccaacagcacgcattggtattt
aaagaccgccctgattatcgctttgttttaggtgaaaaaggcagcgtggtagatatcatt
gccgagcatcgccgcgtagcaaaccgcatcgttgaagagtgcatgataaccgccaacgtt
tgtgcagctatcgtactgcgcgatcgcttgggcttcggtgtctataatacccattctggt
ttcgacccagcgctggttgaacaagccgtgagcattctgcaagccaacgatgtggcggct
aatgccgaagcattgctcacgttgcaaggcttctgtgagctgcgtcgccatctggattcg
ctgccgacgacgttccttgatagccgtgtgcgtcgtttccagacttttgccgaaatcagc
actgagcctggcccgcactatggcctaggtttggaggcatacgcgacctggacctcgcca
attcgtaaatacggtgacatggtcaatcatcgcttgctgaaagcattaatagccgacaaa
ccggctcagcgccccgatgaatctatcacggtgcaaatggcagaacgccgccgcttgaac
cgtatggccgagcgtgacgtcggggattggttatatgcacgtttcctgaaagacaaagtt
gatccagcaattcacttcaatgctgaaatcatcgacatctctcgtggcggaatgcgagtt
cgtctggttgataatggtgcgatagcctttatcccatcgtccttcattcatgctgtccgt
gacgagttggtgtgcagtcaagagactggcagcctacagattaaaggcgaaaccgtatat
caaaccggtgataacctgcaggtctatctgacagaagttcgtatggaaacccgtagcatt
attgctaaacctgtagcgtaa
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