Hafnia paralvei: AL518_14940
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Entry
AL518_14940 CDS
T05667
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hpar
Hafnia paralvei
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpar03019
]
AL518_14940
Enzymes [BR:
hpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AL518_14940
Messenger RNA biogenesis [BR:
hpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AL518_14940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AMH20268
LinkDB
All DBs
Position
complement(3354291..3358178)
Genome browser
AA seq
1295 aa
AA seq
DB search
MTSPLSAIASQLDELMLRDKQRLMRRIQGAKKVKKAESQQAIADTLAVDLASALQRVESR
RAACPKITYPENLPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARSVGDRIAHELDTTLGGAVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDADDVDRDQLQAIFDAVDELGREGSGDILIFMSGEREIR
DTADALTKLNLPHTEILPLYARLSASEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNILDGVRLLEELGAVSTSEQGHQQ
LTPLGRQLAQLPIDPRLARMVLEAQKHGAVREVMIITSGLSIQDPRERPSEKKQASDEKH
RRFADKESDFLSLVNLWDYLKEQQKELSSNQFRRQCKTDYLNYLRVREWQDIYTQLRQVV
KELRIPINSVPGDFRGIHCSLLSGLLSHVGQKDTEKQEYTGARNARFAIFPGSALFKKPP
KWTMVAELVETSRLWGRIAARIDPEWIEPLAQHLIKKSYSEPHWEKAQGAVMATEKVTLY
GLPIVAARKVNYGSIDPQVSRELFIRHALVEGDWQTRHAFFRANQRLRSEVEELEHKSRR
RDILVDDEALFSFYDQRIGHDVVSARHFDSWWKKASRNDPELLNFEKSMLIKDGAQGVSA
LDYPNFWHQGAFKLRLSYQFEPGTDADGVTVHIPLAILNQIEESGFDWQIPGIRRELVIA
LIKSLPKPIRRNFVPAPNYAEAFLGRATPLEMPLLESMERELRRMTGVTVSREEWQLDQV
PDHLRMTFRVIDDKKKTLAEGKSLEALKTQLKGQVQQTLSEVADDGIEQQGLHVWSFGSL
PQSYEQKRGGYSMKAFPALVDEKDSVAIRLFETEQEQQQAMWQGSRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACGIDSLIAKHGGPAWSEEGFTQLHEQVRAEL
NDEVVSIARQVEQILTTANGINKRLKGRVDMSLALALSDIKNQVGNLIYRGFVTATGASR
LPDVERYLHAIERRLEKVATDPHRDRAQMLKVEQVQQAWKQMLNKLPAQRAGEPEIKEIR
WMIEELRVSYFAQQLGTPYPISEKRIMQAIDQILA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgacatccccgcttagcgccatcgcctcgcagcttgatgaactgatgctgcgcgataaa
cagcgtttgatgcgccgcatacagggcgccaaaaaggttaaaaaggccgaaagccaacag
gctatcgcggatacgctcgccgtcgatctggctagcgcgctgcaacgcgttgagtctcga
cgtgcggcctgtcctaaaattacctatccggaaaacttgccggttagccagaagaaagac
gaaatacttgccgcgatccgcgatcaccaagttgtgatcgttgccggtgaaacggggtcg
gggaaaaccactcagctaccgaaaatttgtctggagcttgggcgtggggtaaaaggcctg
atcggccatacccagccgcgtcgtttagccgctcgatcggtcggtgatcgtatcgcgcat
gagcttgacacgacgctaggcggcgcggtgggctataaagttcgttttaacgatcaggtg
agtgacaatacgctggtcaaactgatgaccgacggtattttgctggctgaaattcagcaa
gatcgcatgttgatgcagtatgacactctgattatcgatgaagcgcatgaacgcagtctg
aatatcgattttattctcggctatctacgccagctactgcctaagcgtcccgatctgaaa
gtgattattacgtcggcgaccattgaccctcaacgcttctcgcgtcatttcaataatgcg
cccattatcgaagtctctgggcgcacctatccggtcgaagtgcgctatcgcccggtggtt
gacgatgccgatgatgttgaccgcgaccagcttcaggcgattttcgatgccgtggatgaa
cttggacgagaaggatcgggagatatcctgatctttatgagcggcgagcgtgaaatccgt
gataccgccgatgcactcaccaagctgaatttgccgcataccgaaattcttccgttatat
gctcgtttgtcagctagcgagcaaaatcgcgttttccaaagccaccatggtcgccgtatt
gtgttggcaactaacgtggcagaaacttcgttgaccgttccgggaattaagtacgttatc
gatccgggcacggcgcgaatcagtcgctatagcttcagaaccaaggttcaacgcctgccg
attgaaccgatttctcaggcttcggccaatcagcgtaaaggacgctgcggtcgcgtgtct
gaaggtatctgtatccgtctctacagcgaacaggatttcctgtcacgcccagagtttacc
gatcctgagattctgcgaactaacttagcgtcggttattctacaaatgacgtcgcttgga
ctgggcgatattgccgcatttccgttcgtcgaagcgcccgataagcgcaatattcttgac
ggtgtgcggcttcttgaggaactgggtgccgtcagtacttcagaacaagggcaccaacag
cttacaccgctcggacgccagttggcacagttgcctattgatcctcgcttggcgcgtatg
gtgctggaggcgcagaagcacggcgcagtacgcgaagtgatgatcattacgtcggggctg
tctattcaggatcctcgtgagcgtccgagtgagaagaaacaagcctcggatgaaaaacat
cgccgcttcgctgacaaagagagcgattttctatcgctggtgaatttgtgggattacctc
aaagagcagcaaaaagagctttcgtcgaatcaattccgtcgtcaatgcaaaactgattat
ctcaactacttacgcgtacgtgaatggcaggatatctacactcaactgcgtcaggtggtt
aaagagttacgtattcctattaactctgtgccaggtgatttccgtgggattcactgttct
ttgctgagtggtctgctatcgcatgttggccaaaaggacactgaaaagcaggagtatacc
ggtgctcgaaatgcgcgatttgccattttccctggttccgcgctatttaaaaaaccgcct
aaatggacgatggttgccgagctggtggagacgtctcgactgtgggggcgcattgcggct
cgtatcgatcctgaatggatcgaacctttagcgcagcatctgattaagaaaagctacagc
gaaccgcattgggaaaaggcgcagggcgcagtgatggcgacggaaaaagtcacgctgtat
ggcctacccattgtggctgctcgtaaagttaactacggcagtatcgatccacaggtgagc
cgcgaactgtttatccgtcatgcgctggtggagggcgactggcagacgcgtcatgcgttc
ttccgtgccaatcagcgcttgcgttccgaagtggaagagctagagcacaaatctcgtcgt
cgagatattttagttgatgatgaggcgttgttcagtttctacgatcagcgcatcggtcat
gacgtggtttccgctcgccattttgatagttggtggaaaaaagccagccgcaacgatccc
gaactgctcaatttcgaaaaatcgatgctgattaaagatggagcacagggggtgagcgct
cttgattatcctaatttttggcatcaaggggcgtttaaacttcgtctgtcctatcagttc
gaaccaggtaccgacgctgacggtgtcaccgtacatatcccgctggcgatactcaaccag
attgaagaatcaggttttgactggcagatcccagggattcgccgagaattggtgattgcg
ctgattaaatcgctgccaaaacctattcgacgcaattttgttcctgcacctaactatgct
gaagcctttttaggccgagcaacgccgctggaaatgccgttgttagagtcgatggaacgc
gaactacgtcgcatgactggcgtgacagtgtcacgtgaagagtggcagctagatcaggtt
cccgatcatctgcgcatgacgttccgcgtcattgacgacaaaaagaaaacgctggctgaa
ggtaagtcgcttgaagcgctgaaaactcagctaaaaggtcaggtgcagcaaacgctgtca
gaagtggccgacgatggcatagaacagcagggcttacacgtatggagctttggctctctc
ccgcagagctacgagcagaagcgcggcggttattcgatgaaggcatttcctgctttggtg
gatgaaaaagatagcgtcgcgattcggctgtttgaaaccgagcaggaacagcagcaggca
atgtggcagggttcgcgtcgcttattgctgctcaacattccttcgccgataaaatatttg
cacgaaaagttgccgaataaagccaagctaggcttgtacttcaatccttatggcaaagtg
ttggatttgattgatgattgtatcgcctgcggtatcgactcattgattgccaaacacggt
ggccccgcttggagtgaagaaggttttactcaacttcatgaacaggtgcgtgcagaactt
aacgacgaagtcgtgtcgattgcgcgtcaggtggaacaaatactcacaacggccaatggc
attaataaacggctcaaaggccgcgttgatatgtcattagcgctggcgctgtcagatatc
aaaaatcaggtaggtaatcttatctaccgtggttttgtcaccgctaccggtgcatcgcgt
ttgcctgatgtggagcgttatctgcacgccatcgaacggcggttggagaaggtggcgacc
gatcctcatcgtgatcgtgcgcaaatgctaaaggtcgaacaggtacagcaggcatggaag
caaatgctcaataagctaccggcacagcgtgccggagagcccgaaatcaaagaaattcgt
tggatgatcgaagagctgcgcgtgagttatttcgctcagcaactgggtacaccgtaccca
atttcagaaaaacgtatcatgcaggctattgatcagattttggcttag
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