Hafnia paralvei: AL518_17890
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Entry
AL518_17890 CDS
T05667
Name
(GenBank) sigma-54-dependent transcriptional regulator
KO
K17473
sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
Organism
hpar
Hafnia paralvei
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hpar03000
]
AL518_17890
Transcription factors [BR:
hpar03000
]
Prokaryotic type
Helix-turn-helix
Other families
AL518_17890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PRD
Sigma54_activ_2
AAA_5
AAA
AAA_22
NACHT
Mg_chelatase
AAA_14
RuvB_N
AAA_2
AAA_16
IstB_IS21
AAA_24
nSTAND3
RNA_helicase
AAA_7
AAA_18
Motif
Other DBs
NCBI-ProteinID:
AMH19712
LinkDB
All DBs
Position
complement(4003023..4005815)
Genome browser
AA seq
930 aa
AA seq
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MKRIDKICQELERLTSSLSKSDLQKEVAFTAESIGINLGLARNSVSKDLNQLWNEQRVIK
VKTRPVYFLHRQTIETLLDSPLPDHLSEVRFVSDLLPVEHQSTSNDPFAALIGFDRSLKL
SVEKGKAAVLYPSGLHVLLTGPSGVGKTYFAELMHQFACQQSGNSTLPMVYFNCAEYAHN
PELLSSHLFGHRQGAFTGANSDKVGLIEQADGGYLLLDEIHRLPYEGQEKLFALLDKGEF
RALGSSHKAQTVNVRLICATTEPVNSTLLRTFQRRIQVSIDLPALRERSMEEQIELITGF
LHQESRKISRTIRIDKALLLWLLEKPLEGNIGQLKSDIQFLCAQGWAAGMGQQNDVLTLD
KKLVEQSVMPSADQRLLVDSIFGQQQWLDISSQTLSAFKPSLGVSAGHEDSDLFYRFLTR
EYVNLRNSNVPPQETLAILKNKLRSIFEYGLYSRDTAVVGYSGQLEQRLSLLIGYVEQVV
GFALPENMVNHLRKHFLTLLSYVQRGLIPQLYSSSLILDHCKNEYDNAMQLCRRIDEIFN
IQCPATEVVYLCMFLKECRQYRCQIDDSPELGVIFVAHGATTATSMAQYVNQVLERDLFT
AIDMPFEQSIHDTLEVLTNIIRSRGYRRLILMVDIGSLVHFGSTISKLFQFDVLLLPNMT
LTSLLEIGLDLTYESSDFAALTALMNEKQIPCHWCSPEQAGAGKVLVVSCITGMGTAEKI
HKVLSESFGELMAQDTRLLILDYNEVRSLERIQQALAPHERLVGIVGTFQPGLPDIPFIS
LEEMFSEQGPELLLSLLNPDLSSMERRLEVERSSMRFISALTLESIINQISVLNPRRILQ
EMEGVLQHICQISDLKPSRQVTLRFLIHCCCMVERIVISRKPLQMALNTPQDLDVNAMSV
IKQAFLPIEEAYAIRLSDAEFIYIYELLYC
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtattgataaaatttgccaagagttagaacgcctaacatcaagcctgagtaag
agtgatttgcaaaaggaggttgcatttaccgcagaaagtatcggtattaaccttgggctg
gctcgcaactcagtgagcaaagatcttaaccagctgtggaatgagcagcgcgttattaaa
gtgaaaacccgtccggtttattttttgcatcgtcaaacgattgagacgctgctcgatagc
cctttgccagaccatttatctgaggttcgtttcgtcagtgatttgttaccagtggagcac
caatccacatctaacgatccttttgccgcgcttatcggctttgaccgtagtcttaagcta
tcggtggagaaaggaaaagcggcggtgctgtacccaagcggtttgcatgtgttgctgact
ggtccatcaggggtagggaagacctattttgccgaattgatgcaccagtttgcctgccag
caaagcggcaatagcacactaccgatggtctatttcaactgtgccgaatatgcacataac
ccggaattactctcctcacatctttttggccatcgccaaggggcattcactggcgcgaac
agtgacaaagtcggtctaattgaacaggcagacggcggctatctattattagatgaaatt
catcgccttccctacgaagggcaagaaaaactatttgctctgttggacaaaggtgagttt
agagcactgggatccagccataaagcgcaaacggtaaacgtgcgattgatttgtgccacg
actgagccggtcaattccacgttgttgcgtactttccaacgccgtattcaggttagtatt
gatctacccgctttgcgcgagcgttcgatggaagagcagattgagctgattaccggattc
ctgcatcaggaaagtcgcaaaattagccgaacgataagaatcgataaagcgttgcttcta
tggctgctagagaagccgctggaaggaaatatcggtcagctgaaaagtgatatccagttc
ttgtgtgctcaaggttgggcagcaggaatggggcagcaaaatgatgtattaacgctggat
aaaaaactggttgaacagtctgtgatgccaagcgccgatcagcgcctgttggttgacagt
atttttggtcagcagcagtggctggatatcagttctcaaacgctgtctgcgtttaaacct
tcgcttggggtatcggcggggcacgaggatagtgatttattctatcgattcctcacgcgt
gaatatgtcaacctgcgcaatagtaacgttccgccacaggaaacgttggctattttgaag
aataagctgcgttcaatcttcgaatatggcttgtatagccgtgatactgcggtggtgggc
tacagcggccaactcgaacaacgtttgtctctgttgattggctatgtagaacaggtggtg
ggttttgctctgccagaaaatatggttaaccatctgcgtaagcattttctgactttacta
agctatgtgcagcgcgggcttattccacagctttactcttcaagtctgatcctcgatcac
tgcaaaaatgaatacgataacgcgatgcagttatgcagacgcattgatgaaatatttaat
attcaatgtcctgctaccgaagtcgtgtatttatgtatgttcctgaaagagtgtcgccaa
taccgttgtcagatagatgacagccctgagttaggcgtcatttttgttgcccatggcgcg
actacggcaacgagtatggcgcaatatgttaatcaggttttagaacgagacctgttcacc
gccattgatatgccttttgagcagtccattcatgacacgttagaagtgctgaccaatatc
attcgcagccgtggctaccggcgtttaattctgatggttgatatcggttctctggtgcat
tttggcagcaccattagcaaactgtttcagtttgatgtcctgttgctaccaaacatgaca
ttaaccagcctgttggaaatcggtcttgatctgacctacgagtccagcgattttgcggcg
ctcaccgctttgatgaacgagaagcaaataccttgtcactggtgttcacctgaacaagcg
ggcgcgggaaaagtgctggtggtttcctgtattacagggatggggacggcggaaaaaatt
cataaagtgctatcagaaagttttggtgagttgatggcgcaggatacgcgtttgctaatc
cttgattacaacgaggtacgtagtctggagcgtattcaacaggcactggctccgcatgaa
cgtttagttgggattgtcggcactttccaaccgggcttgccagatattccgtttatttct
ctggaagagatgttttccgaacaaggacccgaactgttactcagcttattgaatcctgac
cttagcagtatggagcgcaggctggaagttgagcgtagttcaatgcgtttcattagtgca
ctgacattagaaagtattattaatcaaatttcagtcctgaaccctcggcgcattttgcaa
gaaatggagggggtactgcagcacatctgtcagatttcagacctcaaacctagccgtcag
gtgacactacgtttcctgatccactgctgctgcatggtcgagcgtatcgtgattagccgt
aaaccgttacagatggcgctgaacacgccgcaggatctcgacgtgaacgcaatgagtgtc
atcaaacaggcatttttgcctattgaagaggcttacgcgattcgtttatctgacgccgaa
tttatttatatctacgaacttctctactgctag
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