Glaesserella parasuis SH03: JL26_00565
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Entry
JL26_00565 CDS
T03301
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03420
Nucleotide excision repair
hpas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL26_00565 (uvrD)
03430 Mismatch repair
JL26_00565 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpas03400
]
JL26_00565 (uvrD)
Enzymes [BR:
hpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL26_00565 (uvrD)
DNA repair and recombination proteins [BR:
hpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL26_00565 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JL26_00565 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
DUF7432
SpoIIAA-like
DUF4391
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIK16436
LinkDB
All DBs
Position
complement(92051..94234)
Genome browser
AA seq
727 aa
AA seq
DB search
MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILAV
TFTNKAAAEMRHRIEYTLSQSSDHRLFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDT
EDQQRLIKRLLKLHNLDEKQFPPKQVAWFINAQKDQGLRAKDLKQSHDDPHSQQLVKFYQ
IYQEACDRAGLLDFAELLIRAYELFKYNPLILQRYQQRFQHILIDEFQDTNNIQYDLIHL
LAGKTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDNAQTIRLEQNYRSTGHILNSANT
LIANNDNRLGKNLWTDKGDGDPVDIYCAFNELDEARFVASQIKQWKEDEGDFNQCAVLYR
GNAQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVVNTPP
RAIGDRTLDILRQLTRTRQITLWQAIQVAVQEEHLSGRSASALLRFVELINALEQETEEM
PLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATRQFVKPDEAEEMTDLTAFL
THASLEAGETQASLHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEER
RLAYVGITRAKKKLTISYAESRRLYGKEERHLPSRFIGELPEEHIREVRLRGSINRPATF
AKPQANPTARLQEDSGWKMGQKVRHEKFGQGTIINVEGSGDHTRLQIAFVQQGIKWLIAK
VAKLEKM
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatttttctttattacttgacggcttaaacgataaacaacgagaagcggtagcagcc
cctattggcaactatttagtgttagcaggtgcaggtagtgggaaaacccgtgtgcttacc
caccgtattgcgtggttaattggcgttgaaaatatcgctgagtccaatattcttgctgtg
accttcaccaataaagccgcagcggaaatgcgtcatcgtattgaatataccctatcgcaa
tctagcgatcaccgcttattcggtatgtgggtcggtacattccatagcattgcaaaccgc
ttacttcgctctcattatcttgatgccaatctgccgcaagattttcagattatggatacg
gaagatcagcaacgtttgattaaacgcttactcaaattgcataatttagatgaaaagcag
tttccaccgaaacaagtggcgtggtttatcaatgctcaaaaagatcaggggctaagagca
aaagatctcaaacaatctcacgatgatccccattcacaacagctcgttaaattctatcaa
atctatcaagaggcttgtgatcgtgcagggttgttggactttgcagaactcttaatccgt
gcttatgaattattcaaatataacccattgattttacaacgttatcagcaacgttttcag
catattctgatcgatgaatttcaggataccaataacattcaatacgatcttattcattta
ttggcaggaaaaacgggcaaagtaatgattgtgggcgatgacgaccaatctatttacggc
tggcgtggtgctcaagtggaaaacattcaacgcttcttgaatgattatgacaacgcacaa
actattcgccttgaacaaaattaccgctccacaggacatattttaaattcggcaaatacg
ttaattgcaaacaatgacaaccgcttagggaaaaatctttggacagataaaggcgacggt
gatcccgttgatatttattgtgcattcaatgaattagatgaagctcgctttgtcgcttca
cagatcaagcaatggaaagaagatgaaggcgattttaatcaatgtgctgtgctttatcgt
ggtaatgcccagtcccgtgttattgaagaagccctaattcaagccaacattccttaccga
atttatggcggaatgcggttctttgaacgccaagagatcaaagatgccctagcctattta
cgtttaatcgctaaccgccaagatgatgctgcctttgaacgtgtggtcaatacaccccca
agagcaataggggatcgcaccttagatattttgcgtcagcttactcgaactcgccaaatc
accttgtggcaagcaatccaagtggctgttcaagaagaacatctttcggggcgttccgcc
tcagccttgcttcgctttgtcgaactgattaacgcacttgaacaagaaaccgaagaaatg
ccactgtttgaacagacggattttgtgattaaaaaatctgggctttatgaaatgtataag
caagaaaaaggggaaaaaggcgaagttcgtattgagaacttagaggagttagtgactgca
acacgccaatttgtaaaaccagatgaagcagaagagatgaccgatctcaccgctttctta
actcacgcctcccttgaagctggcgaaacacaggcttcactacatcaagattatgtggaa
ttaatgacattacattcagccaaaggcttagaatttccacgggtgtttatcgttggggtt
gaagaagggattttcccaagtggaatgagcttcgacgaaggtcgcttgcaagaagaacgt
cgcttggcttatgtcggtattacacgagcgaagaaaaaactcacgatcagctatgccgaa
agtcgccgcttgtacggcaaagaagaacgccatttaccgtcacgttttattggcgagctg
cctgaagagcatatccgagaagtccgcctgcgtggaagtatcaatcgccctgctactttt
gcaaaaccacaagctaatccgaccgctcgtttacaagaagatagtggttggaaaatgggg
cagaaagttcgccacgagaaatttgggcaaggaacaatcatcaatgtggaaggcagcggt
gatcatactcgcctgcaaattgcctttgtacaacaagggattaagtggttaattgccaaa
gtggcgaagttggaaaagatgtaa
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