Glaesserella parasuis SH03: JL26_02025
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Entry
JL26_02025 CDS
T03301
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL26_02025 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpas03021
]
JL26_02025 (rho)
03019 Messenger RNA biogenesis [BR:
hpas03019
]
JL26_02025 (rho)
Transcription machinery [BR:
hpas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JL26_02025 (rho)
Messenger RNA biogenesis [BR:
hpas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JL26_02025 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
OB_RNB
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AIK16684
UniProt:
A0A084EEZ9
LinkDB
All DBs
Position
362017..363279
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AA seq
420 aa
AA seq
DB search
MHLTELKNTPVSELVRIGEEQMGLENLARLRKQDIIFAILKQHAKSGEDIFGQGVLEILP
DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDLV
NDDKPEVSRSKILFENLTPLHANSRLRMERGNGSKEDLTARILDLASPIGKGQRGLIVAP
PKAGKTVLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRH
VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKIAERRVFPAID
FNRSGTRKEDLLTSPDELQKMWILRKILNPMGEVEAMEFLIDKLMVAKTNDEFFEIMKRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttacagagttaaaaaatacacccgtatcggaacttgtccgtatcggtgaagaa
caaatggggctagaaaacttagctcgcttacgcaaacaagatattatctttgccattttg
aaacaacacgcaaaaagtggtgaagacattttcggtcaaggcgtgttagaaatcttacct
gatggttttggtttcctccgttctgccgatagttcttaccttgcaggccctgatgatatc
tacgtttccccaagtcaaatccgccgtttcaatcttcaaactggtgacaaaatcgaaggt
aaaatccgcccaccaaaagaaggcgaacgttactttgcattgctaaaagtcgatttagtc
aatgatgataaacctgaagtttctcgtagcaaaattctctttgaaaacttaacgccactg
cacgctaactcacgtttgcgtatggaacgtggtaatggttcaaaagaagatttaaccgct
cgtatcttagatttggcttcaccaatcggtaaaggtcagcgtggtctgatcgttgcacca
ccaaaagccggtaaaaccgttttacttcaaaacattgctcaaagcattacccataactat
cctgagtgtgaattaatcgttttgttaattgatgaacgtccagaagaagtaactgaaatg
caacgttctgtgaaaggcgaagtaattgcttcaacctttgatgaacctgcaactcgccac
gttcaagttgccgaaatggtaattgaaaaagcgaaacgtttagtcgaacataaaaaagat
gtggttattttattagactctatcacacgtttagcacgagcttacaacacagtaacccct
gcgtctggtaaaattctttctggtggtgtggacgctaacgctttacaccgcccaaaacgt
ttctttggtgctgctcgtaacgtagaagaaggcggtagcttaaccattattgcaacggca
cttgtggatacaggttcaaaaatggacgaagttatctttgaagagttcaaaggaacaggt
aatatggaattacacctttctcgcaaaattgcagaacgccgtgtattcccagcgattgac
tttaaccgttcaggcacgcgtaaagaagatctactcacaagcccagatgaattacaaaaa
atgtggattttacgcaaaatccttaacccaatgggtgaagtggaagcaatggagttcctt
attgataaattgatggtcgcaaaaaccaacgatgagttttttgagattatgaaaagatct
taa
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