Glaesserella parasuis SH03: JL26_03230
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Entry
JL26_03230 CDS
T03301
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hpas
Glaesserella parasuis SH03
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpas03016
]
JL26_03230
Enzymes [BR:
hpas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JL26_03230
Transfer RNA biogenesis [BR:
hpas03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JL26_03230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AIK16897
LinkDB
All DBs
Position
complement(579317..581296)
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AA seq
659 aa
AA seq
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MFQNNPLLAQLKQQIEASKEYVEGVVKTSDKSYGFLECEKNSYFIPPVEMKKVMHGDKVK
AVVKRDGDKEQVEIDSLLEPMLERFIAQVRFNKDGKLQLAVDHPSINNFIPANTQKKVTE
TLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKADDNFAPWWVTLARHEQPREPVANEKS
YELQDQVEREDLTHLYFTTIDSASTKDMDDALYVEPITENGTQTGWRLVVAIADPTAYIP
EQSAIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGYIETDLSGNVVG
EARFVSAWVQSKARLVYDEVSDYLEKVENHWTPDYAETAQQIDWLYQFTLARIDWRSKNA
LLFKEQGDYSFELAEDGAVKAIHIEYRRIANQMIEEAMIIANICAAQFLDKYAHTGVFNT
HSGFDSKNLEPARKFLLDTLSNDENRESLSERYSPERLSTLEGYCEMRRDIEQFPENFLE
MWLRRYLTFAEFKATSAPHLGLGISHYATWTSPIRKYGDMVNHRLIKQVLANQTAKPVEE
TVLARLQEARKQNRMVERDIADWLYARYLAPMVEQNVEFDGEIHDVSRGGLRVKVIENGA
SVFVPFSTLHNNKEEMLFSPEEIALYIKGEKAYQIGQAVKVKLKEVRVETRSVVGDVLI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaataaccccctattagctcaattaaaacaacagattgaagcaagcaaagaa
tatgttgaaggcgttgtgaaaacgtcagataaaagttatggctttttagaatgtgagaaa
aatagctatttcattccccctgtggaaatgaaaaaagtgatgcacggcgataaggtcaaa
gctgttgtgaagcgtgatggcgataaagagcaagttgaaattgactcgttattagagcca
atgttagaacgttttatcgctcaagtgcgttttaacaaagacgggaaattgcaattagcc
gttgatcacccaagtatcaataactttattccagccaatacgcagaaaaaagtcacagaa
acccttgaaaatggcgactgggtggtggcacagttgaaaacacaccctcttcgtgatgat
cgctttttctttgctcaagtcacgcaatttatctgtaaagcggacgataatttcgcgccg
tggtgggtaactttagctcgccacgaacagcctcgtgaacctgttgcgaatgagaaaagc
tatgaattacaggatcaagttgagcgcgaagatctaactcacctctattttactaccatt
gacagtgccagcactaaagatatggacgatgcgttatacgttgaaccaattaccgagaac
ggcacgcaaacaggctggcgtttagtcgttgcaattgccgatccgaccgcttacattcct
gagcagtctgcaattgaaaaagccgctcgccaacgctgtttcaccaactatcttcctggt
tttaacattccgatgttgccacgagagctgtccgatgatctttgctctctcgtgccgaat
gaaaaacgcccagcattagtcggctatattgaaacagatttaagcggcaatgtggtaggt
gaagctcgctttgtgtcagcttgggttcaatctaaagctcgtttggtctatgacgaagtg
tctgattatctcgaaaaagtcgaaaatcactggacaccagactatgcagaaaccgcacag
caaatcgactggttgtatcaatttacccttgctcgtatcgactggcgtagcaaaaatgca
ttgctatttaaagagcaaggcgattacagctttgagttagctgaagacggcgcagtcaaa
gcaattcacattgaatatcgccgtatcgctaaccaaatgatcgaagaggcaatgattatt
gccaacatctgtgccgcacagtttttagataaatatgcacacacaggtgtatttaatacc
cactcaggttttgatagcaaaaacctagagcctgctcgcaaattcttactggatacactt
tccaatgatgaaaatcgagagagtttatctgaacgctactcccctgagcgtttaagtacc
cttgaaggctattgcgaaatgcgtcgtgatattgagcaattccctgaaaatttcttagaa
atgtggttacgtcgctatttaacttttgctgaatttaaagcaacctcagctccgcattta
ggtttaggcatcagccattatgcaacttggacatcgccaattcgtaaatatggcgatatg
gtcaatcatcgtttaattaaacaagtccttgcaaatcaaacagcaaaacctgtcgaagaa
accgttttagctcgcttacaagaagctcgtaagcaaaatcgtatggttgaacgtgatatt
gccgactggctttatgctcgttatcttgcgccaatggtagaacaaaacgtagaatttgac
ggtgaaatccacgatgtttctcgtggtggcttgcgtgttaaagtcattgagaatggagct
tcggtttttgttccattctcaactctgcataataacaaagaagaaatgttatttagccca
gaagagattgcactctacatcaaaggcgagaaggcttaccaaatcgggcaagcggtgaaa
gtgaaacttaaagaagttcgtgtagaaacaagatcggttgtgggtgacgttttaatctaa
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