Glaesserella parasuis SH03: JL26_03480
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Entry
JL26_03480 CDS
T03301
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL26_03480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpas03019
]
JL26_03480
03016 Transfer RNA biogenesis [BR:
hpas03016
]
JL26_03480
Enzymes [BR:
hpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JL26_03480
Messenger RNA biogenesis [BR:
hpas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JL26_03480
Transfer RNA biogenesis [BR:
hpas03016
]
Prokaryotic type
tRNA degradation factors
JL26_03480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
S1_2
KH-I_KHDC4-BBP
KH_SLS1_2
aRib
Motif
Other DBs
NCBI-ProteinID:
AIK16934
LinkDB
All DBs
Position
634362..636491
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AA seq
709 aa
AA seq
DB search
MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTV
DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN
PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAG
TDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTD
LINKVKALAEARLGDAYRITEKQARYEQIDAIKADAIAQLTAEDETISSGKIVDIITALE
SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERD
AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF
PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI
LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMYILGVMEQAI
PAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATD
NNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITEARVER
VADYLSVGQEVQVKVVEIDRQGRIRLTMKDLNGDATATEIVEEIQELAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgactccaatcgttaaacaatttaaatacggtcagcataccgtaactttagaaacaggg
gctattgctcgtcaagcaacagcagcagtaatggcaagtatggacgatacgacggttttt
gttaccgttgtggcaaaaaaagaggtgaatgaaggccaagacttcttcccattaactgta
gattatcaagagcgtacttacgcggcaggtcgtattccgggtggtttcttcaaacgtgaa
ggtcgtccatctgaaggcgaaaccttaatcgcgcgtttaattgaccgtccagttcgtcca
cttttccctgaaggtttcttcaacgaaattcaagtgattgcaacagtggtttctgttaat
ccacaaatcagcccagatttagtggcgatgatcggtgcttcagcagcattatctctatct
ggcgtgcctttcaacggtccaatcggtgcggctcgtgttggtttcattgataaccaattt
gtgcttaacccaactacatcagaacaacgtttaagccgtttagatttagtagtggctggt
acagacaaagcggtattaatggttgaatctgaagcagatattttaactgaagaacagatg
ttagcggcagtggtattcggtcacgagcaacaacaagttgtgattgaaaacatcaaagaa
tttgtgaaagaagcaggcaaaccacgttgggactgggttgctccagagccaaatacggat
ttaatcaataaagttaaagcattagcagaagctcgtctgggcgatgcttaccgtattact
gaaaaacaagcacgttatgaacaaattgacgcaatcaaagctgatgctatcgctcaatta
accgcagaagatgaaaccatttcaagcggcaagattgtagatattattaccgcattagaa
agccaaatcgtgcgtagccgtattatcgcaggcgaaccgcgtattgacggtcgtacagtg
gataccgtgcgtgcattagatatttgcactggcgttttaccacgtactcacggttcagca
ttgtttacccgtggtgaaacacaggcgttagcagttgcgacattagggacagagcgtgat
gcacaaattattgacgaattaacaggcgaaaaatcagatcgcttcttattccactacaac
ttccctccatattcagtaggtgaaacaggtcgtatcggttcgccgaaacgtcgtgaaatc
ggtcacggtcgtttagcgaaacgtggcgtgttagcagtaatgccaacggcagaagagttc
ccatatgttgtgcgtgtggtttctgaaattaccgagtcaaacggttcttcatcaatggct
tctgtatgtggtgcttctcttgcgttaatggacgcaggtgtaccaatcaaagcggctgtt
gctggtatcgcaatgggcttagtgaaagaagaagagaaatttgtggtactttcagacatt
ttaggtgatgaagaccacttaggtgatatggactttaaagtagcaggtactcgtgaaggt
gtaactgcattacaaatggacatcaaaattgaagggatcacccctgaaattatgcgtatc
gcattaaatcaagcaaaaggtgcgcgtatgtacattttaggcgtaatggaacaagcgatc
cctgcaccacgttcagaaatttctgacttcgcacctcgtattcatacaatgaagatcgat
ccgaagaaaatcaaagatgtgatcggtaaaggtggtgcgacaattcgtgcattaaccgaa
gaaaccggcacatcaatcgacattgatgatgacggaacagtgaaaattgcggcaacagac
aacaacgccgcgaaacgtgttatggaacgtatcgaagagatcgttgcagaagtcgaagtg
aatgcaatctacaaaggtaaagtaactcgtgtggttgatttcggtgcattcgtgtctatc
cttggcggtaaagaaggtttagtgcatatttctcaaatcacggaagctcgtgtagaacgt
gttgcggattacttatctgttggtcaagaagttcaggtgaaagtggtagaaatcgatcgt
caaggtcgtatccgcttaactatgaaagatctgaatggtgatgcaactgcaacagaaatt
gttgaagaaattcaagaattagcagaataa
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