Glaesserella parasuis SH03: JL26_04695
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Entry
JL26_04695 CDS
T03301
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03410
Base excision repair
hpas03430
Mismatch repair
hpas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JL26_04695
03430 Mismatch repair
JL26_04695
03440 Homologous recombination
JL26_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpas03400
]
JL26_04695
DNA repair and recombination proteins [BR:
hpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JL26_04695
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JL26_04695
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JL26_04695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AIK17138
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Position
complement(873323..875053)
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AA seq
576 aa
AA seq
DB search
MQKLVQRRPQLTEQRLSENPLLNRIYQSRGVKSPAELDLSLKGLHHPKGLANMEQAVDLL
LDSLTRQDRIVIVGDFDADGATSTALAILALRQFGFQQVDYLIPDRFSQGYGLSLSVAEM
VMAKGADFVLTVDNGISSFEGIALLKAQGIRVLVTDHHLPADSLPNADAMVNPNLAACTF
PSKSLAGVGVIFYVMMALRAKMRELCYFKEKEPNIAELLDLVALGTVADVVPLDHNNRIL
VNQGLNRIRSGHCRVGIQALAEVAKRDLYALQASDLGFAIAPRLNAAGRLENMSLGVELL
ISDNLALARQFALELDSLNQTRKEFEQEMKAEALALCAKLPTLSQQNQAQGIVLYQPDWH
QGVIGILASRIKDQFHRPVIAFAQESDDSEYLKGSARSIAGLHMRDLLERIDAKYDNLIV
KFGGHAMAAGLTIHQDHLAQFQTVFDETVNEVAEPEWLQGVIYTDGELLADEFNLATAEL
LKQAGPWGQHFPEPTFEGRFRILQQKLLAGKHLKMMVENEYGTLFDAIWFNVDVKCYPDL
SIKQATFVYKLDINEFRGGKNLQLLIEYLLEDDQFK
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaattagtccaacgtcgtccccaattaacagaacaacgattatcagaaaatcct
ctattaaaccgtatctatcaaagtcgaggggtaaaaagccctgcagagttggatttatct
ctcaaaggtttacatcaccctaaagggcttgccaatatggaacaagccgtggatttactg
ttagacagtttaactcgacaagatcggattgtgattgtgggggattttgacgcagatggt
gcaaccagtaccgctttggcgattttggcgctacggcagttcggttttcagcaggttgat
tatttaatccctgatcgcttttcacaaggctatggcttaagccttagtgttgcggaaatg
gtcatggcaaaaggggcagattttgttttaacggtagataatggcatttcttcttttgaa
gggattgctttacttaaagctcaagggattcgggttcttgtaaccgatcaccatttacct
gcagacagcctgccaaatgcagatgcaatggtaaacccaaatctggccgcttgtactttt
ccctcaaagtctttggctggtgtcggggtgattttctatgtgatgatggccctgcgagct
aaaatgcgtgagctgtgctacttcaaagagaaagagcctaacattgcagaattattagat
cttgttgctttaggaacagttgcagatgtcgttccgcttgatcacaataatcgcattttg
gttaatcagggtttaaatcgtattcgttcagggcattgccgagtggggatccaagcattg
gcagaggtggctaaacgagatctctatgctttgcaagccagcgatctagggtttgccatt
gccccaagattgaatgcggctgggcgattagagaatatgtctttgggggtagagctgttg
atttccgataatctcgcgttggctcgtcaatttgccctagagctggattcattaaatcag
actcgtaaagaatttgagcaagagatgaaagcggaagccttagccctttgtgctaagttg
ccaacgctctctcagcaaaatcaagcacaaggtatcgtgttatatcaacctgattggcat
caaggggtgattggcatcttggcttctcgcattaaagatcagtttcaccgtcctgttatt
gcatttgctcaggaaagtgatgatagtgaatatttaaaaggatctgctcgttctattgct
gggctgcatatgcgagatttattagaacgtatcgatgctaaatatgataatttgattgtc
aagtttggcggacacgcaatggcggccggtttgaccattcatcaagatcatttagctcaa
tttcaaactgtatttgacgaaaccgtgaacgaagttgcagaacctgaatggttacaaggt
gtgatttatacagacggcgagttgttagccgatgaatttaatctagcaacggcagaacta
ctcaaacaagcggggccttgggggcaacattttccagaaccgacttttgaggggaggttt
cgtatcttgcaacagaaacttttggctggaaaacatctgaaaatgatggtggaaaatgaa
tatggtacgctattcgatgcaatctggtttaatgttgatgtaaaatgctatcctgattta
tctattaaacaggcaacatttgtttataaattggatattaatgaatttaggggaggaaaa
aacctccaactacttattgaatatttattagaagatgatcaattcaaataa
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