Glaesserella parasuis SH03: JL26_05990
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Entry
JL26_05990 CDS
T03301
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JL26_05990 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpas03400
]
JL26_05990 (sbcB)
Enzymes [BR:
hpas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JL26_05990 (sbcB)
DNA repair and recombination proteins [BR:
hpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JL26_05990 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JL26_05990 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JL26_05990 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AIK17373
LinkDB
All DBs
Position
complement(1145721..1147271)
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AA seq
516 aa
AA seq
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MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVM
VTGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYE
YSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAMA
DVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHI
NKCPILAPAKTLLSENATRLGIDRQACLENLKLLKSQKSLVREKVIDILSEERNYPASNN
IETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPRIEPLLFHYRARHYSETLTRA
EQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggttcaaaccaccttttttatttacgattacgaaagttttggtgtcgatcctgctaca
gatcgtcctgcacaatttgcagggatccgcaccgatagcgatttcaacattatcggtgaa
cctgtaatgttctactgccaacaaacagaagattatttgccttcaccagaagctgtgatg
gtaacagggattacaccacagctttgtaatcaacaagggctacctgaacctgaatttgcc
gctcgtattcacgccgaatttagccaacctaacacctgcgtaatgggatataacaacatt
cgctatgatgatgaaatgacccgttatacctttttccgcaattttttcgatccttatgaa
tatagctggaaaaacggcaattctcgttgggatcttcttgatgttgtgcgtgcctgttat
gctttacgtccagaagggatagaatgggcgtatgatgatgaaggtatgccgagctttaaa
ttagaaaatttgaccaaagcaaatggtattgctcacgacaacgctcacgatgcaatggct
gatgtgtatgctactattgcaatggcaaagttaatcaaacaaaaacaacctaaattattc
gactttttcctgcaaaatcgaggtaaaaaagccctagaagagatgattgatgtcggtgaa
atgacaccgcttgttcacgtttctggaatgttaggcaactatcgaggcaacaccgcttgg
gttgtgccattggcttggcatccgactaatcgaaacgcagtgattgtatgtgatctatcg
gggaatataaacgacctattgaatgagccaagcgaaatattgcgtgaacgtctttatacc
aaaaaagtagaattagaagctcaagggctttatgctgttccactaaaactcgtgcatatt
aataaatgcccaattttagctccagctaaaacgttactgtctgaaaatgcaacacgttta
ggcatcgatcgtcaagcctgtttagaaaatttaaaactgctaaaatcccaaaaaagcctt
gtgcgagaaaaggttattgatatcctttctgaggaaaggaattatccagcgtcaaataat
atagaaaccacgttatacgatggcttttttgaacctgcagataaaaacaatatggcgatt
ttgcgaaatctaaaacctgaagagcttgcacatcacggcttgaaatttagcgatccaaga
attgaacctctacttttccattatcgagcaagacattactcagaaaccttaacacgcgca
gaacaagtacgctggcaaaagtattgctatcaacaacttgaaacaaaagcagaggccttt
gaacaagcggttgatctgttatcggctcaatatcacgataattctgaaaagataaaatta
ttgacagatctcaccgcttacgcagcacaattaatgcagcctaaagccaccaagtccgtc
aattcaccagcttcagagctattagtatcggaattaaatcaacttgctgatcaagggctg
agtaaagcggataaattaaaagcgattggggctttgcttaataaaaaataa
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