Glaesserella parasuis SH03: JL26_06470
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Entry
JL26_06470 CDS
T03301
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL26_06470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpas03400
]
JL26_06470
DNA repair and recombination proteins [BR:
hpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL26_06470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JL26_06470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
DUF5683
UB2H
EAD9
Motif
Other DBs
NCBI-ProteinID:
AIK17460
LinkDB
All DBs
Position
1251969..1253984
Genome browser
AA seq
671 aa
AA seq
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MSKQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLN
RPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINE
QIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLA
ELQYTRNDQAFQRATFRVRGEVIDIFPAESDGVALRVELFDDEIENLSLFDPLTGHNLGR
VPRYTIYPKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMM
NELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRAR
KETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVIDQVVRPTGL
LDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS
DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT
IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD
IGQTDKPKRSKKSAKSSDDQTAYIPKTRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDK
IHQLKAYLLEL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacagggtaaaccatttattttacattcccccttcaaaccctcaggcgaccaa
ccgactgcgattgccaaattagtcgagggattgaatgatggcttggcacatcaaaccttg
ctaggtgtaacaggatcgggcaaaacctttaccattgcaaatgtgattgcgactttaaac
cgtccagcaatggtgcttgccccgaacaaaacccttgcggcacaactttatgccgagatg
aaagcctttttccctgaaaatgcggtggagtatttcgtttcctactacgattactatcag
cccgaagcctatgtgcctgctagcgatacttttattgaaaaagatgcctctattaatgag
cagatcgaacagatgcgactgtctgccaccaaatcttttttagaaagacgggatacgatt
gtagtcgcatcggtgtcggcaatttacggcttgggagatgtagatgcctatatgcagatg
atgttacatctgcaagtgggggaaatgatcgaccaacgcaaaattctctctcgccttgct
gaattacaatatactcgtaacgatcaagcctttcagcgggcgactttccgtgtgcgtggt
gaagtgattgatattttccctgccgaatcggacggtgtcgctctgcgtgtggaactgttt
gatgatgaaatcgaaaatctgtccttattcgatccgcttacagggcataatttagggcga
gttccccgttatacgatctacccaaaaactcactacgttactccgagagatcggatttta
gaagcgattgagcagatcaaaaaagaacttgccgagcgtcgaacttactttatcaaagag
aataaattactcgaagaacagcggatcgcccagcgtacccagtttgatattgagatgatg
aacgagttgggctactgctcaggcattgaaaactactcacgttatttatcgggcagaaaa
gagggtgaaccgccaccgaccttgtttgattatatgccgtctgatggcttgctgattatt
gatgagtcccacgttaccgtgccacaaatcggcggtatgtttaggggcgaccgagcaaga
aaagaaactttggtgcaatacggtttccgtttgccatctgctttagacaaccgtccgttg
cgttttgaagagtttgaacgcttatcgccacagacaatctatgtatcggcaacccctgga
ccttacgaattagagaaaaatcctgatgtaatcgaccaagtggttcgtccgactggcttg
ttagatccgattatcgaagttcgccctgtggcaacgcaagttgatgatttattgtcagaa
attcataagcgtgtggcggtagatgaacgagtgctagtcaccacgctgacaaaaaaaatg
gcggaagatttaacggactacctagacgaacacggcgtacgagtgcgttatctacatagc
gatattgacacagtcgagcgggttgaaattatccacgatttgcgaatgggaatgtttgat
gtgttagtggggatcaacctactgcgagaaggtttggatatgcctgaagtgtcgctggtg
gcgattttagatgccgacaaagagggctttttgcgttccgaacgttctttaatccaaacc
atcggacgtgccgcccgaaatctcaacggcaaagcgattttatacggcgaccgcattacc
aactcaatgcaaaaagcaatcaccgaaaccgaacgccgccgagagaaacaacaaaaatac
aacgaagaacacggcattgtgccacaagcattgaacaaaaaagtcggcgagttgcttgat
attgggcagacggataaaccgaaacgcagtaagaaatctgcaaaatcaagcgatgatcaa
accgcttacattccgaaaactcgcaaagagttagaaaaagaactgaaagtgcttgaacaa
cagatgagagattttgctaaagatcttgagtttgaaaaagcggctgcggtgagggataag
attcatcagttgaaggcgtatttgttagaactttaa
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