Glaesserella parasuis SH03: JL26_08760
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Entry
JL26_08760 CDS
T03301
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas03030
DNA replication
hpas03430
Mismatch repair
hpas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL26_08760 (dnaE)
03430 Mismatch repair
JL26_08760 (dnaE)
03440 Homologous recombination
JL26_08760 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpas03032
]
JL26_08760 (dnaE)
03400 DNA repair and recombination proteins [BR:
hpas03400
]
JL26_08760 (dnaE)
Enzymes [BR:
hpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JL26_08760 (dnaE)
DNA replication proteins [BR:
hpas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JL26_08760 (dnaE)
DNA repair and recombination proteins [BR:
hpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JL26_08760 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AIK17849
LinkDB
All DBs
Position
1702114..1705590
Genome browser
AA seq
1158 aa
AA seq
DB search
MSQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGS
GVKPIVGADVMVRPEPESEELYELTLLAKNNTGYHNITLLLSKAYQQGYVEFPVVEKAWL
AEHNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSLCRTGRSDEERY
IQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDPKRPQKYSEQQYFR
SEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGDLSTEDFLVKKAKEGLE
KRLVFLFPDPEVRASKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVSET
YGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLAKAFEAEPKL
PELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYFDSYGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPLVRIESIPLDDEKAFKLLK
AAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLESGMVQNFIDRKHGKEPI
AYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
AQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE
FMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFSVNEKGEIVYGLGAIKGV
GEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIMAGAFDKLGPHRAALMKN
LEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKWTEQTILDNEKATLGLYL
SGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARIATTKKGSRIGIATIEDR
SGKMDLTLFSEALENYGDLLQKDQIIIATGAVQHDDFSGGLKMAVREMITLDEARSRYAR
SLALAIKQEQLSAKFIKDLTAIIEPYKEGTLPLHFYYQSPEGRVLLRSGVEWRVTPKETM
LQKLKDFLGENAVELEFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacctcgttttgttcatctgaaagtacacagtgatttctcaatgattaatggc
ttggcgaaagtgaagccgttaatcaaagcctgtgttgccaacaatatggtcgcaatggca
ttgaccgattttactaacttctgtggcttggtgcgtttttacggcgaagccttaggatcg
ggagtgaagccgattgttggggcagatgtgatggttcgccctgaacctgagagtgaagag
ttatacgaacttacccttttagccaaaaataataccggttatcataacattaccctttta
ctttcaaaggcttatcaacagggctatgtggaatttcctgtggtggaaaaagcgtggctg
gcagaacataatgaaggcgtgattttgctttcgggcggtagcaatggcgatgtaggtaag
gcattattgaaagaaaatcagcaagaagccgaacagcttttggctttttatcaacgttat
ttccacaatcattattatctttccctttgtcgaacaggaagaagtgatgaagaacgttat
attcaacaagcggtcactttttcgcaaaaatttgcaattccgttggtggctgtcaatgat
gtgatgtttttaaaacaggacgattttgaagcccacgaaatccgtgttgccattcacgac
agctttacgttagacgatcctaaacgcccacaaaaatattcggaacagcaatacttccgt
tcagaagacgaaatgtgtcagttgtttgccgatttgccacaagcgattgaaaatacctta
ttcattgctcaacgttgtaatgtcaccattcgtttaggggaatatttcttaccgaatttc
ccgacgggcgatctttccactgaagattttttagtcaaaaaagccaaagaaggtttggaa
aagcgtctggtatttttgtttcctgatcctgaagtgcgggcaagcaagcggtctgtttat
gatgaaagattgcaagtcgagttggacgtgatcaaccaaatgggctttcccggctacttt
ttaattgtgatggaatttattcagtggtcgaaagacaacgatattcctgttgggccgggg
cgtggctcaggggcaggatccttggttgcttatgcgttgaaaattaccgatcttgacccc
cttgaatttgatttactctttgaacgtttcttaaatccagaacgggtttcgatgcccgat
tttgatgtggatttctgtatggacgggcgagatcgtgtgattgaacacgtgtcggaaacc
tatggttgccaagcggtgtcgcagattattacctttggtactatggcggcaaaagcggtt
attcgagatgtggggcgtgtgcttggacacccttatagttttgtggatcgtatttctaaa
ttgatcccccctgaccctggtatgacgttggcaaaagcctttgaagccgagcccaaattg
cctgagctttatgatactgatgaagaagtgaaagccttgattgatatggctcgtaagctc
gaaggggtaacacgtaatgcaggtaaacacgcagggggcgtggtgattgccccaacggcg
attactgatttttcgccactttacttcgactcttacggtttacaccctgtgacccacttc
gataaaaatgatgtggagtatgcaggcttggttaaatttgactttttgggcttacgcacg
ctgacgatcatcaaatgggcgttagagatgatcaatcaacgcttggaaaaagaaggtaag
ccactggttcggattgaaagtattccccttgacgatgaaaaagcctttaaattattaaaa
gcagccaaaaccacggcggtattccagctagagtcacggggtatgaaagatctgatttca
cgcctacaaccaagtaactttgaagatattattgcgttggtagccttattccgtccaggt
ccgcttgagtcgggaatggtgcagaactttattgaccgtaaacacggcaaagagccgatt
gcctatcctgatgcccagtatcagcacgagtcgctgcagccgattttagagccaacctat
ggcattatcgtttatcaagagcaagtaatgcagattgcacaggtgttggctggctatacg
ctcggtggtgcggatttattgcgtcgtgcgatgggtaagaaaaagcccgaagagatggcg
gctcaacgggcaacctttgaagaaggggcgaagaagcagggaattgatggcgagttggcg
atgaaaatcttcgacttggtagaaaaattcgcaggctacggctttaataaatcgcactcg
gcggcttatgcgttggtatcctatcaaaccttgtggctcaaaacccattacccagcggag
tttatggcggcggtgatgacttcagagatggataacaccgataaaatcgtcggcttttat
gatgaatgtatcaatatgggattaaccgttgttccgcctgatattaacagcggtaaacac
cgttttagtgtcaatgaaaaaggcgaaattgtctatggtttaggggcaatcaaaggcgta
ggcgaaggcccgattgatgcgatgttagaagctcgcaataaagacgggattttcaaagat
ctattcgatctaaccgctcgtgttgatttaagaaaagttaatcgtcgcacatttgaagga
ttaattatggctggggctttcgataaactagggcctcaccgtgcggcgttgatgaaaaat
ttagaagatgcccttagagcgtccgatcaacataataaaatggaagcacttggacagagt
gatatgtttggcgtgctgactgaaacccccgaagaagttcagaacgcctatgccaacacg
ccaaaatggacggagcagaccattttagataacgaaaaagccaccttaggtttatatcta
agtggacaccctgttggacgttttttgaaagagttagctcattatgcaccgaataaatta
aatgaagttcaaccaacctatcgaggacaaactactaccgttgctggattaattatgggg
gcaagaattgcgacaaccaaaaagggtagtcgtattgggattgcaacgattgaagatcgt
tcaggtaaaatggatctcacccttttttcagaagcactggaaaactatggcgatctgttg
caaaaagatcagattattatcgcaacaggggctgtgcaacacgatgatttcagtggtggc
ttaaaaatggcggttcgcgaaatgattactcttgatgaagctcgtagccgttatgcaaga
agtttagctctagcgatcaaacaagaacagctctcagcaaaatttatcaaagatctgacc
gctattattgagccttataaagagggaacattaccgttacatttctattatcaaagccca
gaagggcgtgtattattgcgtagtggcgttgagtggcgtgttaccccaaaagagacgatg
ctgcagaaattaaaagattttttaggcgaaaatgccgttgagttggagtttgagtag
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