Glaesserella parasuis SH03: JL26_11405
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Entry
JL26_11405 CDS
T03301
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpas
Glaesserella parasuis SH03
Pathway
hpas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JL26_11405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpas03021
]
JL26_11405
Transcription machinery [BR:
hpas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JL26_11405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Terpene_syn_C_2
Dsc3_C
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
AIK18292
UniProt:
A0A6I5WLI9
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All DBs
Position
2233872..2235737
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AA seq
621 aa
AA seq
DB search
MEQYSQLEEQQSQLELLIAQGREQGYLTISEVHDHLPEELVDADQIEDIIQMINDMGIKV
LETAPDADDLMLAGNIADEDVVEEATKVLSTVESEIGRTTDPVRMYMREMGTVELLTREG
EIDIAKRIEEGINEVQCVIAEYPEALSELIARYDQVEEGTVRLSDLVTAFVDPNAVESTP
VDDLDADLDEESESDTVADIDDESEDGESSGDGGDDNSIDPELAREKFTLLKEQHQKALQ
AIQKHGRTSKRSRDQIQALSDIFREFRLVPKQFDLLVETMQKMMKQVRAEERQIQRYAVE
YAGMKKTDFIKVFQGNELSEAWIDKAINAKKGGVPKLANYVDNIRVNIANLQKLEETTGL
TITQIREIGGRIADGELKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQCLQE
MGREATPEELAEKMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSSLELPLD
SATAESLRIATNAVLEEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSETLRSFLDD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatactctcaattagaagaacaacaatctcagttagaacttcttatcgctcaa
gggcgtgagcaaggatacttaacgatttcagaagttcacgaccacttaccagaagaactt
gtcgatgcagatcagattgaagacattattcaaatgattaacgatatggggattaaggtg
ctggaaactgcccctgatgccgatgatttgatgcttgcaggcaatattgccgatgaagac
gtagtggaagaggcgactaaagtactttctacggtagaatctgaaattggtcgaactacc
gatcctgttcgtatgtatatgcgtgaaatgggaacggttgagttgcttacacgtgaaggt
gaaattgatattgcaaaacgcattgaagaaggaattaacgaagttcagtgtgtcattgca
gaataccctgaggccttaagtgaattaattgctcgttatgatcaagtcgaagaaggcact
gtacgtttatccgatcttgtaaccgctttcgttgatccgaatgcggtagaaagtacccct
gtagatgacctcgatgccgatctagatgaagaaagcgaaagtgataccgttgcagatatt
gatgatgaaagtgaagatggtgaatcatcaggcgatggtggtgatgataatagcattgat
ccagaacttgctcgtgagaaatttacgctattaaaagagcaacatcaaaaagccttacaa
gcaatccaaaaacatggacgtactagcaagcgttcaagagatcaaattcaagcactttcc
gatattttccgtgaatttcgcttagtgccaaaacaatttgatttgttagtggaaacgatg
caaaaaatgatgaagcaagtgcgagcagaagaacgtcaaattcaacgctatgctgtagaa
tatgcaggcatgaaaaagacggatttcatcaaagtattccaaggtaatgaattatctgag
gcgtggattgataaagcgatcaatgctaaaaagggtggtgtgccaaaattagccaactat
gtagataatattcgtgtaaatatcgcaaacttgcagaaacttgaggaaacaacaggttta
accattacgcaaatccgtgaaattggcggacgcattgcagatggcgaattaaaagcacgc
aaagcgaagaaagagatggtagaagccaacttacgtcttgttatctctattgctaaaaaa
tataccaaccgtggtttacaattccttgatttaattcaggaaggtaacatcggcttaatg
aaagcagtagataaatttgaatatcgccgtggttataaattctcaacttatgcgacttgg
tggattcgccaagcgattactcgctcaattgcagatcaggctcgtactattcgtattcct
gtgcatatgattgaaacgatcaacaaattaaatcgtatttctcgccaatgcttacaagag
atgggacgtgaagcaacacctgaagagttagcagaaaaaatgggaatgccagaggataaa
attcgtaaagtcctcaaaattgctaaagagccaatctcaatggaaacaccagtgggggat
gacgatgattcacatttaggggatttcatcgaagatagctctcttgagttgcctcttgat
tctgcaacagcagaaagtttgcgaattgcaacgaatgctgtattagaggagggattaaca
cctcgtgaagcaaaagtattgcgtatgcgttttggtattgatatgaataccgatcacacc
cttgaagaagtgggtaaacaatttgatgtaactcgtgagcgtattcgtcaaattgaagca
aaagcgttacgcaagctccgccaccctagccgttccgaaactctacgcagtttcttagat
gattaa
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