Glaesserella parasuis ZJ0906: K756_00670
Help
Entry
K756_00670 CDS
T02697
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hpaz
Glaesserella parasuis ZJ0906
Pathway
hpaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K756_00670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpaz03019
]
K756_00670
03009 Ribosome biogenesis [BR:
hpaz03009
]
K756_00670
Enzymes [BR:
hpaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K756_00670
Messenger RNA biogenesis [BR:
hpaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K756_00670
Ribosome biogenesis [BR:
hpaz03009
]
Prokaryotic type
rRNA processing factors
K756_00670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
KH_11
TMEM106_N
Motif
Other DBs
NCBI-GeneID:
16166883
NCBI-ProteinID:
AGO15414
UniProt:
A0A806J1D6
LinkDB
All DBs
Position
133732..136689
Genome browser
AA seq
985 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPQGYVFQGRPNIKDIIQEGAEVIVQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLDLKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRATRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIAL
SILRLLEEEAIKENSVQVHAIVPVEIASYLLNEKRKAISDIEKRHDVQVIVVPTESMETP
HFSVYRLRENEIVPTLSYDLVKRYQEQDEENHIHHHHSEEALVSRNKPVITVESVLQSSE
LNLQPAPTPVEPAKPSLISRIIAKIKAMFASEEKEPEKKQGKGKARNQRERRQQRREKPN
RNERQERKNTVVEATKEAEVVPVEPKKRREIVEEVVGVSVPQQREAKVAERRQRRDLRKK
VRIETAEHSAEITASLPPAEENAADSFVAEPVVTTVNAEMPLETSEPVVEERTEQREPRQ
RRLPRHLRVGNQRRRERREEVKAVMPLTSAVASPELASGKVWIKFSEMPKAVAEEKPRFL
SVDEMLQQQEQPVQSVAREVAEPAKEKANTQAHQDSAVPFGYFVTQSSDRDLVKDNHKRR
TKVEAESAEVDPKAVALSAKPFGLVVSQPTNRDLVKENHERRHIKLEELGTQAVESEQKV
AAPIPKPIKVYQSQYQFEGKLGTFSRVAHTQVEMTVAAAPAEEIALIQAKEWQNSKYYFY
GKGFGGHSSAVSHVYSAPRGAKIKG
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaaaagaagagttgcgtgttgcccttgttgat
gggcaacgactgttcgacttggatattgaaagcccaggacacgaacaaaagaaagcgaat
atctacaaaggtaaaattacccgtgttgaacccagtcttgaagcagcattcgttgattac
ggtgcagagcgtcacggtttccttccgttaaaagagatttctcgtgaatacttccctcaa
ggttatgtattccaaggtcgcccaaacataaaagatattattcaagaaggggcggaagtt
attgttcaagtcagcaaggaagagcgtggtaataaaggggcggctttaacgacctttatc
tctttggctggtagctatcttgttttaatgccaaataaccctcgtgctggcggtatttct
cgtcgtattgaaggggacgagcgtttagatctgaaagaagcgttagattgcttagatgta
cctgaagatgtgggtttaattgtgcgtactgctggggtgggtaaatcccctgaagagcta
caatgggacttaaaagttttattacatcactgggaagcaatcaaaaaagcggcagaatct
cgccctgcaccgttcttaattcatcaagaaagtgatgtgattgtgcgtgcaatccgtgat
tatcttcgtcgtgatattggtgagattttgatcgataatcgtaaggtatttgagaaagca
aaaaatcatatccgccttgtgcgtcctgattttatcaaccgtgttcgcctgtatgaaggt
gaagtaccgttgttcagtcactatcaaatcgaatcccaaatcgaatcagcattccaacgt
gaagtgcgtttaccgtcaggcggttctattgtgattgatgtaaccgaagcattgacagct
atcgacatcaactcatctcgtgcgacccgtggtggagacattgaagaaacagcattaaat
accaacttagaagcggcagacgaaattgctcgtcagttacgtttgcgtgacttgggcggt
ttaatcgtgatcgactttattgatatgactccagttcgtcatcaacgtgaagtggaaaat
cgtatccgtgaagcgacacgccaagatcgtgcaagaatccagtttggacgcatttctcgt
ttcggattacttgaaatgagccgtcagcgtttaagtccatcattaagtgaagcgtcatca
cacgtttgccctcgctgtcaaggtacaggaaaaattcgtgataacgagtcgattgcactc
tccattttacgtttattagaagaagaagcgattaaagaaaactcagtacaggttcacgct
attgtgcctgtggaaattgcttcgtacttattaaatgaaaaacgtaaggcgattagcgac
attgaaaaacgccacgatgtccaagtgattgttgtaccaaccgaaagtatggaaacccca
cactttagcgtatatcgcctgcgtgagaatgagatcgttccaaccttaagttacgattta
gtgaaacgctaccaagaacaagatgaagaaaatcacattcatcatcaccattcggaagaa
gcgttggttagccgtaataagccagtgattaccgttgaatcagtattacaaagttcagag
ttaaatttacagcctgcaccaacaccagttgagccagcaaaaccttcgttaatcagtcga
attattgcgaaaatcaaagcaatgtttgcaagcgaagagaaagaacctgagaagaagcaa
ggtaaaggtaaggctcgtaaccagcgtgaacgtcgtcagcaacgccgtgaaaaaccaaac
cgcaacgaacgccaagagcgtaaaaacacggtcgttgaagcaacgaaagaagctgaagtc
gttccagtagagcctaagaaacgtcgtgaaattgtagaagaagtggtaggtgtttcagtt
ccgcaacagcgtgaagcgaaagtggctgagcgtcgccagcgtcgtgacttacgtaagaaa
gtgcgaattgaaactgcagaacattcagcggaaattaccgcttctttaccaccagcagaa
gagaatgcggctgattcatttgtggcagagcctgtggtgactacagtaaatgcagagatg
cctttggaaacttcagagcctgtagtagaagagcgtacagagcaacgtgagcctcgccaa
cgccgtttacctcgccatttacgcgtaggcaatcagcgtcgtcgtgagcgtcgtgaggaa
gtaaaagcagtaatgccattaacttcggctgtcgcttcgcctgaacttgcaagcggtaag
gtttggattaaatttagcgaaatgccaaaagctgttgcggaagagaaacctcgtttctta
tctgttgatgagatgttacaacagcaagaacagccagttcaatctgtagcaagagaagta
gctgaacccgcaaaagagaaagctaacactcaggctcatcaagattcagcggtaccattt
ggttatttcgtaactcaaagttcagatcgtgatttagtcaaagacaaccacaaacgtcgt
acgaaagttgaagcagaatccgcagaagttgatccgaaagcagtggctttatcggctaaa
ccattcggacttgtggtttctcaaccgactaaccgagatttagttaaagaaaatcacgaa
cgtcgccatattaaattggaagagctagggactcaagcggtcgaatctgagcagaaagtt
gcagctccgattccaaaaccgattaaggtttatcaaagtcaatatcagtttgaagggaaa
ctaggcacattctctcgtgttgcacatacgcaagtagaaatgacggttgcagcagcacca
gcggaagaaattgccttaattcaagcaaaagagtggcagaactcaaaatactatttctac
ggaaaaggctttggcggacatagtagtgcagtgagccacgtttattctgcacctaggggt
gcaaaaataaaaggttga
DBGET
integrated database retrieval system
