Glaesserella parasuis ZJ0906: K756_05195
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Entry
K756_05195 CDS
T02697
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpaz
Glaesserella parasuis ZJ0906
Pathway
hpaz03410
Base excision repair
hpaz03430
Mismatch repair
hpaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K756_05195
03430 Mismatch repair
K756_05195
03440 Homologous recombination
K756_05195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpaz03400
]
K756_05195
DNA repair and recombination proteins [BR:
hpaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K756_05195
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K756_05195
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K756_05195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-GeneID:
16167199
NCBI-ProteinID:
AGO16237
UniProt:
A0A806J314
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Position
complement(968066..969796)
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AA seq
576 aa
AA seq
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MQKLVQRRPQLTERRLSENPLLNRIYQSRGVKSPAELDLSLKGLHHPKGLANIDQAVDLL
LDSLTRQDRIVIVGDFDADGATSTALAILALRQFGFQQVDYLIPDRFSQGYGLSLSVAEM
VMAKGADFVLTVDNGISSFEGIALLKAQGIRVLVTDHHLPADSLPNADAMVNPNLAACTF
PSKSLAGVGVIFYVMMALRAKMRELCYFKEKEPNIAELLDLVALGTVADIVPLDHNNRIL
VNQGLNRIRSGHCRVGIQALAEVAKRDLYALQASDLGFAIAPRLNAAGRLENMSLGVELL
ISDNLALARQFALELDSLNQTRKEFEQEMKAEALALCAKLPTLSQQNQAQGIVLYQPDWH
QGVIGILASRIKDQFHRPVIAFAQESDDSEYLKGSARSIAGLHMRDLLERIDAKYDNLIV
KFGGHAMAAGLTIHQDHLAQFQTVFDETVNEVAEPEWLQGVIYTDGELLADEFNLATAEL
LKQAGPWGQHFPEPTFEGRFRILQQKLLAGKHLKMMVENEYGTLFDAIWFNVDVKCYPDL
SIKQATFVYKLDINEFRGGKNLQLLIEYLLEDDQFK
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaattagtccaacgtcgtccccaattaacagaacgacgattatcagaaaatcct
ctattaaaccgtatctatcaaagtcgaggggtaaaaagccctgcagagttggatttatct
ctcaaaggtttacatcaccctaaggggcttgccaatattgatcaagcagttgatttgttg
ttagatagcttaactcgacaagatcggattgtgattgtgggggattttgacgcagatggt
gcaaccagtactgctttggcgattttggcgctacggcagttcggttttcagcaggttgat
tatttaatccctgatcgcttttcacaaggctatggcttaagccttagtgttgcggaaatg
gtcatggcaaaaggggcagattttgttttaacggtagataatggcatttcttcttttgaa
gggattgctttacttaaagctcaagggattcgggttcttgtaaccgatcaccatttacct
gcagacagcctgccaaatgcagatgcaatggtaaacccaaatctggccgcttgtactttt
ccctcaaagtctttggctggtgtcggggtgattttctatgtgatgatggccctgcgagct
aaaatgcgtgagctgtgctacttcaaagagaaagagcctaacattgcagaattattagat
cttgttgctttaggaacagtcgcagatatcgttccgcttgatcacaataatcgcattttg
gttaatcagggtttaaatcgtattcgttcagggcattgccgagtggggatccaagcattg
gcagaggtggctaaacgagatctctatgctttgcaagccagcgatctagggtttgccatt
gccccaagattgaatgcggctgggcgattagagaatatgtctttgggggtagagctgttg
atttccgataatctcgcgttggctcgtcaatttgccctagagctggattcattaaatcag
actcgtaaagaatttgagcaagagatgaaagcggaagccttagccctttgtgctaagttg
ccaacgctctctcagcaaaatcaagcacaaggtatcgtgttatatcaacctgattggcat
caaggggtgattggcatcttggcttctcgcattaaagatcagtttcaccgtcctgttatt
gcatttgctcaggaaagtgatgatagtgaatatttaaaaggatctgctcgttctattgct
gggctgcatatgcgagatttattagaacgtatcgatgctaaatatgataatttgattgtc
aagtttggcggacacgcaatggcggccggtttgaccattcatcaagatcatttagctcaa
tttcaaactgtatttgacgaaaccgtgaacgaagttgcagaacctgaatggttacaaggt
gtgatttatacagacggcgagttgttagccgatgaatttaatctagcaacggcagaacta
ctcaaacaagcggggccttgggggcaacattttccagaaccgacttttgagggacggttt
cgtatcttgcaacagaaacttttggctggaaaacatctgaaaatgatggtggaaaatgaa
tatggtacgctattcgatgctatctggtttaatgttgatgtaaaatgctatcctgattta
tctattaaacaggcaacatttgtttataaattggatattaatgaatttaggggaggaaaa
aacctccaactacttattgaatatttattagaagatgatcaattcaaataa
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