Helicobacter pylori B38: HELPY_0116
Help
Entry
HELPY_0116 CDS
T00950
Symbol
topA
Name
(GenBank) DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase)
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpb
Helicobacter pylori B38
Brite
KEGG Orthology (KO) [BR:
hpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpb03032
]
HELPY_0116 (topA)
03400 DNA repair and recombination proteins [BR:
hpb03400
]
HELPY_0116 (topA)
Enzymes [BR:
hpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HELPY_0116 (topA)
DNA replication proteins [BR:
hpb03032
]
Prokaryotic type
DNA Topoisomerases
HELPY_0116 (topA)
DNA repair and recombination proteins [BR:
hpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HELPY_0116 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Zn_ribbon_LysW
zf_Rg
DUF7575
Motif
Other DBs
NCBI-ProteinID:
CAX28669
LinkDB
All DBs
Position
118360..120570
Genome browser
AA seq
736 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRKIDMSKVNAQQARRFLDRIVGFKLSSLIASKITKGLSAGRVQSAALKLVIDKER
EIKAFKPLTYFTLDAYFESHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYTISS
IVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRT
DSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALK
DYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
IKQTENANDGVKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEG
VKCPECGGDIALKRSRKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKAH
ECIKCKERVFLEEDNG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattatcgtagaatcccccgcaaaagccaaaacaattaaaaattttttg
gataaaaattacgaagtcattgcctctaaagggcatgttagggatttatccaaattcgct
ttaggcattaagattgatgaaacaggcttcactcctaattatgtcgtggataaagaccat
aaagagcttgtcaaacagatcatagagctttctaaaaaagcatctattacttatatcgct
accgatgaagaccgagaaggggaagcgataggctatcatgtggcatgtttgattgggggg
aaattggagagctatcctaggattgtttttcatgagatcacgcaaaatgcgattttaaac
gctctaaaaaccccacgaaaaattgacatgtctaaggtcaatgcccaacaagccagacgc
tttttagatcggatcgtgggttttaagctcagctcgttgattgcatcaaaaatcactaaa
ggtttgagcgctgggcgggtgcagagtgcggctttaaagcttgtgattgataaagaaagg
gaaatcaaagcctttaagcctttaacctacttcacgctagacgcttactttgagtcgcat
ttagaagcgcaactcatcagctataagggcaacaaactcaaagcccaagaactcattgat
gaaaaaaaagcccaagagattaaaaacgaattagaaaaagaaagctacactatctctagt
atcgttaaaaaatctaaaaaatcccccacaccgccccctttcatgacttctactttacag
caaagcgcttccagtcttttaggcttttcgcccacaaaaaccatgagtatcgctcaaaaa
ttatatgaaggcgtagccaccccgcaaggcgttatgggggtaatcacttacatgaggacc
gatagcttgaatatcgctaaagaggctttagaagaagcgaggaataagattttaaaagac
tatggcaaagactacttgccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcaggcccacttctattattttagagccaaacgctttaaaa
gactaccttaagcctgaagaattaaagctctatactttaatttacaaacgttttttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgcgaaaaaggc
gagtttaaagcgagtggcagaaaactcctttttgatggctattataaaattttaggcaat
gacgataaggacaaattgctccccaatttgaaagaaaatgaccccattaaattagaaaaa
ttagagagcaacgcccatgttacagaacctccagcgcgctattcagaagcgagcttgatt
aaagttttagaaagtttaggcataggcaggcccagcacctacgccccaacgatttccctc
ttgcaaaacagagactacatcaaggtagaaaaaaagcaaatcagcgctttagagagcgct
tttaaggtgatagaaattttagaaaagcattttgaagaaatcgtggattccaaattcagc
gcttctttagaagaagaactggacaatatcgctcaaaataaagccgactatcagcaagtc
ttaaaggacttttactacccttttatggataaaattgaagccgggaaaaagaatatcatc
tctcaaaaagtgcatgaaaaaaccggccaatcatgccctaaatgcgggggggaattagtc
aaaaagaatagccgttatggggagtttatcgcttgtaacaattaccctaaatgcaaatac
atcaaacaaactgaaaacgctaatgatggagtcaagcaagaattgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaatggggcgtttttagcttgcaacaactaccct
gaatgcaaaaacaccaaatcgttaaaaaacacccctaacgccaaagaaacaatagaaggc
gtgaaatgcccagaatgcggaggggatattgccttaaaaaggagcaggaaaggctcgttt
tatggctgtaacaattaccctaaatgcaattttttatccaaccataagcccatcaacaag
cgttgcgagaaatgccattatttgatgagtgaaagaatctatcgcaagaaaaaggcgcat
gaatgcattaagtgcaaagagcgcgtgtttttagaggaagataatggctaa
DBGET
integrated database retrieval system
