Helicobacter pylori B38: HELPY_0252
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Entry
HELPY_0252 CDS
T00950
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD-box family DEAD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpb
Helicobacter pylori B38
Pathway
hpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELPY_0252 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpb03019
]
HELPY_0252 (deaD)
03009 Ribosome biogenesis [BR:
hpb03009
]
HELPY_0252 (deaD)
Enzymes [BR:
hpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HELPY_0252 (deaD)
Messenger RNA biogenesis [BR:
hpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HELPY_0252 (deaD)
Ribosome biogenesis [BR:
hpb03009
]
Prokaryotic type
rRNA helicases
HELPY_0252 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
UvrD-helicase
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CAX28796
LinkDB
All DBs
Position
246190..247668
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTLKTPNKKTPPHEPARSFKKGQHRDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaaattgatgatgacgcttatcataagcct
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggcttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccaccagagaattagcc
atgcaaattagcgatgagatttttaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaaccctcaagtg
atgatcgctacaccaggaaggttgttggatcatttaaaaaacgaacgcatccataaattt
gtgcccaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcacagatcttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
gagcatgagagagccgaagcgatcatgcgccttttggacacccaagcgcccaaaaagagc
attgttttcacgcgcactaaaaaagaggccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgctttgcatggggatatggatcaaagggatcgccgctcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttagtggctacagatgtagcgagccgtggg
ctagacattagcggtgtaagccatgtgttcaattaccacttgcccctaaacaccgagagc
tatatccatcgcattgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaatcgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttacatgacgct
aaagtgtctgaagggatcatcagtctctatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgacgcgattcaaaaccctaaagaaaaaacgctaaaaacccctaacaaaaaa
acgcccccgcatgagccagcgcgttctttcaaaaagggtcagcacagagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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