Helicobacter pylori B38: HELPY_0351
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Entry
HELPY_0351 CDS
T00950
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpb
Helicobacter pylori B38
Pathway
hpb03410
Base excision repair
hpb03430
Mismatch repair
hpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HELPY_0351 (recJ)
03430 Mismatch repair
HELPY_0351 (recJ)
03440 Homologous recombination
HELPY_0351 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpb03400
]
HELPY_0351 (recJ)
DNA repair and recombination proteins [BR:
hpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HELPY_0351 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HELPY_0351 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HELPY_0351 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Fe-S_biosyn
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
CAX28894
LinkDB
All DBs
Position
complement(341353..342903)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVVSIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLNNDEVPDAYAIINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEEEPPLTLK
LKDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQILRFKDKECVKEAIY
FNAERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggtctctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgtgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcatt
gcaatccctaatcgcttcatggatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattaacgcctttgaagccgcgcgattt
tgtaaagaaaaaaattacacccttatcatcaccgatcaccattgcttaaataatgatgaa
gtcccagacgcttatgcaataatcaaccccaagcaaccagattgtgattttatccaaaag
gaagtgtgcggggcgttggtagcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagtgagttgttgtgcttagcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttggtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttacgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttctttcaacatcgcccctttaatcaattccgcagggcgcatg
caagacgctaaaatggctttagattttttaagcgcgaataattttcaagatggctattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaatcatcgtcgcttttaaggacaat
tggcatgagggcgtgcttgggatcgtggcttcaaaattagtggaagccacccaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctctccaaac
attgacttgattgacgctttgaatggggtttcttctttattactcggctatggagggcat
aggcaagcgtgcgggttgagcgttggaaaaaacaatatcgtctcgctctttgaaacttta
gaaaattttgattttaaagtcttgcctttttgtgaagaagaaccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagagatgggcgaaccttatgggcaa
gaaaaccctgaacccttattccaagcaaaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaaattctgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacgctgagcggtttttgaaagcgggcgaaaaggtgagcgtgcttttcagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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