Helicobacter pylori B38: HELPY_1170
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Entry
HELPY_1170 CDS
T00950
Symbol
rpoBC
Name
(GenBank) Bifunctional DNA-directed RNA polymerase subunit beta-beta'[DNA-directed RNA polymerase subunit beta (Transcriptase subunit beta) (RNA polymerase subunit beta); DNA-directed RNA polymerase subunit beta' (Transcriptase subunit beta') (RNA polymerase subunit beta')]
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpb
Helicobacter pylori B38
Pathway
hpb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HELPY_1170 (rpoBC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpb03021
]
HELPY_1170 (rpoBC)
03400 DNA repair and recombination proteins [BR:
hpb03400
]
HELPY_1170 (rpoBC)
Enzymes [BR:
hpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HELPY_1170 (rpoBC)
Transcription machinery [BR:
hpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HELPY_1170 (rpoBC)
DNA repair and recombination proteins [BR:
hpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HELPY_1170 (rpoBC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
DUF7210
Motif
Other DBs
NCBI-ProteinID:
CAX29831
LinkDB
All DBs
Position
complement(1173183..1181855)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIHTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILINRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCLKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGCMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAKDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGIIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSTNSVISKPTTNTFKTIATWDPYNTPIIADFKGKVNFVDVIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEMRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDDPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccgaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgtatcactttagaatacgcaggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagagaggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagataccaagagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcgtttatt
attaatggggtggagcgcgtggtggtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagaatctagcacttctttaaacaagctcattcacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttgtatgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacattattaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccatttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaagatcattcttttagcgggtaaaaagctcacttccagaaagattaaagagcttaaa
gaaaaccatttggaatgggtggaataccctatggatattttaatcaatcgccatttagct
gagcctgttatggtagggaaagaagtcttattggacatgctcactcaactagataaaaac
aaattagagaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattcttttttggccgattctgagtctttgaaattg
ctcaagcaaacggaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgaccctgaacgctatgatttgaccatggtggggcgcatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaaaatcaaaaacaatcagggcaagattgatgatagggatcacttg
ggcaatcgtaggatcagagcggtaggggaattgttggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggtggccagctctcgcagtttatggatcaaacgaaccccttgagtgaggttacgcac
aaacgccgcctttcagcgctcggtgaaggggggttggtgaaagatagggtagggtttgaa
gccagggatgtgcaccccacgcattatggccgaatctgtcccattgagaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaagtggtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttgggcgatttgattgaaacgcgcgtggaaggcgaaatcgttttaaacgaa
aaaagtaaagttaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgctttaatggggactaacatgcag
cgccaagccgtgcctttgttaagaagtgacgcccccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaatatttacattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaggtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggat
aggggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgcgatcgtggtgagtgagcgcatcactaaagacgatgttttcacttcc
acccacatttatgaaaaagaagtggacgctagggagcttaagcatggtgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagtgggatc
gttaaagtcggcacttatgtgagtgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggctcttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaggatgcacgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccac
aatggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttggtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaatattgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctagcatgcta
gaggataaaaccaaggattttgccaaagaattgcgtgctaaaatgctagaaatcgctaac
gccattaatgaaaaagatcccttgacaatccatgtgcttgagaattgctctgatgaagag
cttttggaatacgctaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgacgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcacg
ggcccttatagcttagtaacgcaccagcctgttgggggtaaagcgctctttggaggtcaa
aggtttggggaaatggaagtgtgggccttggaagcttatggcgcagcacacactctcaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttctatgtcttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagttctttccag
ctcacactagctagccccgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcctgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggtacatgcgaaaaatgcggcgtggcgatcacgcattccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcacatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagaaccaggcgaagctgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggttttgtagcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttgttgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgaatggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggtgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcaccagaaatcatt
gtgcgcaacgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgt
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagcgagatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaatcttaaaatggatgaatgcgggttgcctaaaaac
atggcgttagagctcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaagctaaacgcatgattgaacaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctgctcaaccgcgctcctaccttgcacaaa
caatccattcaagcgttccatccaaagctgattgacggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctcatgctaagctctatgaatatcctt
ttgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcagggtgcatgatcattaagtccattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggcattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgaccgctatcgcaaaagat
aaagagggctttaactctatttatatgatggcagatagcggcgcaaggggtagcgcggca
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggacggcagcatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacggcgctaaaaacagccaatgcagggtat
ttgacaagaaagctcattgacgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgaattgatcgagccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcctattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggtgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttgggcgaaggcaagatgagctatccaggtgaagcggtg
ggcgtggtagccgcgcaatctattggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgtgaaatcgtggcgagcaaagaa
ggttttgtgcgtttttacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaatttgttttaaggagaagcgatattgtcaagccaagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggttggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggtataatcaaatactatgttttagaggctaaccatttagagcgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcactaatagcgtgatttctaaacccacgactaacactttcaaaacgatt
gctacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgaatttt
gtggatgttatcgcaggggttacggtcgctgaaaaagaagacgagaataccggtatcacc
agtttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagagatgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattactgggggtcttccaagggtttcggaattgtttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggatagtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattattttgtg
gataaaggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaggcgatg
acagatggagtaatctcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtgagcattgccgac
aagcacattgaaatcattgtctctcaaatgctaaggcaagtgcgcattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcacc
agagcggctatcggtagcgatagtatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgccatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagagcgcttgaagatgaccctaaattttga
DBGET
integrated database retrieval system
